miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCCAAAGGGATCGCATTGATC

selected species: Oryza sativa

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM693280	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATC 	20

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM571078-22531	TCCAAAGGGATCGCATTGATC	TCAGTGCAATCCCTTTGGAAT	up	1	0

Secondary structure

CTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCC
-----------AGTGGAGGACTCCAAAGGGAT 	2
-----------AGTGGAGGACTCCAAAGGGATC 	1
----------------AGGACTCCAAAGGGATCGCATTGA 	8
----------------AGGACTCCAAAGGGATCGCATT 	3
----------------AGGACTCCAAAGGGATCGCAT 	1
-------------------ACTCCAAAGGGATCGCATTGA 	2
--------------------CTCCAAAGGGATCGCATTGAT 	10
--------------------CTCCAAAGGGATCGCATTGA 	5
--------------------CTCCAAAGGGATCGCATTG 	1
---------------------TCCAAAGGGATCGCATTGATC 	53
---------------------TCCAAAGGGATCGCATTGA 	1
---------------------TCCAAAGGGATCGCATTGAT 	1
-----------------------CAAAGGGATCGCATTGATC 	3
------------------------------ATCGCATTGATCTGGCTAGCTATCT 	1
-------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	37
--------------------------------------------------------------------------------------------------CAGTGCAATCCCTTTGGAAT 	4
---------------------------------------------------------------------------------------------------AGTGCAATCCCTTTGGAAT 	1

Overlaps with: MNEST004351
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM571078-22531	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATC 	53
-------------------------------TCCAAAGGGATCGCATTGA 	1
-------------------------------TCCAAAGGGATCGCATTGAT 	1
---------------------------------CAAAGGGATCGCATTGATC 	3

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM520638-18676	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-----------------------------CATCCAAAGGGATCGCATTGATC 	2
------------------------------ATCCAAAGGGATCGCATTGAT 	1
------------------------------ATCCAAAGGGATCGCATTGATC 	8
-------------------------------TCCAAAGGGATCGCATTGA 	16
-------------------------------TCCAAAGGGATCGCATTGATCC 	3
-------------------------------TCCAAAGGGATCGCATTGATC 	673
-------------------------------TCCAAAGGGATCGCATTGAT 	43
--------------------------------CCAAAGGGATCGCATTGATC 	4
---------------------------------CAAAGGGATCGCATTGATC 	9
------------------------------------------------------------------------------------------------------------TCATGCGATCCTTTTGGAGGC 	5

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM520640-18679	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-----------------------------CATCCAAAGGGATCGCATTGATC 	3
------------------------------ATCCAAAGGGATCGCATTGATC 	28
-------------------------------TCCAAAGGGATCGCATTGA 	24
-------------------------------TCCAAAGGGATCGCATTGATCC 	6
-------------------------------TCCAAAGGGATCGCATTGATC 	1562
-------------------------------TCCAAAGGGATCGCATTGAT 	40
-------------------------------TCCAAAGGGATCGCATTGATCCT 	3
--------------------------------CCAAAGGGATCGCATTGATC 	4
---------------------------------CAAAGGGATCGCATTGATC 	13
-----------------------------------------------------------------------------------------------------------ATCATGCGATCCTTTTGGAGG 	1
------------------------------------------------------------------------------------------------------------TCATGCGATCCTTTTGGAGGC 	2

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM571077-22529	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATC 	34
-------------------------------TCCAAAGGGATCGCATTGA 	4

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM520634-18667	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATC 	11

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM520636-18672	TCCAAAGGGATCGCATTGATC	TCAGTGCAATCCCTTTGGAAT	up	1	0

Secondary structure

CTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCC
--------------GGAGGACTCCAAAGGGATCGC 	1
----------------AGGACTCCAAAGGGATCGCATTGA 	5
-----------------GGACTCCAAAGGGATCGCATTGA 	1
---------------------TCCAAAGGGATCGCATTGATC 	16
------------------------------------------------------------------------------------------------ATCAGTGCAATCCCTTTGGAAT 	1
-------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAA 	1
-------------------------------------------------------------------------------------------------TCAGTGCAATCCCTTTGGAAT 	15

Overlaps with: MNEST004351
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM520636-18672	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATCC 	1
-------------------------------TCCAAAGGGATCGCATTGATC 	16

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM520635-18669	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATC 	12

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Oryza sativa	GSM520637-18674	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
------------------------------ATCCAAAGGGATCGCATTGATCC 	1
------------------------------ATCCAAAGGGATCGCATTGATC 	3
-------------------------------TCCAAAGGGATCGCATTGA 	38
-------------------------------TCCAAAGGGATCGCATTGATC 	487
-------------------------------TCCAAAGGGATCGCATTGAT 	25
--------------------------------CCAAAGGGATCGCATTGATC 	2
---------------------------------CAAAGGGATCGCATTGATC 	4

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Oryza sativa	GSM693279	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGATC 	15
-------------------------------TCCAAAGGGATCGCATTGA 	4

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Oryza sativa	GSM520639-18678	TCCAAAGGGATCGCATTGATC	TCATGCGATCCTTTTGGAGG	up	0	1

Secondary structure

GCCGGTGTAGCAGCAATGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGATCCTTTTGGAGGCTTCCTCTAGCCATTAAAACTTCGATCT
-------------------------------TCCAAAGGGATCGCATTGAT 	23
-------------------------------TCCAAAGGGATCGCATTGATC 	442
-------------------------------TCCAAAGGGATCGCATTGA 	3
-------------------------------TCCAAAGGGATCGCATTGATCC 	1
---------------------------------CAAAGGGATCGCATTGATC 	5

Overlaps with: MNEST041997 MNEST048917
Overlaps with miRBase pre-miRNAs: osa-MIR393a
HuntMi prediction: true miRNA