miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCAAAGGGATCGCATTGATCC

selected species: Arabidopsis thaliana



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415785 TCCAAAGGGATCGCATTGATCC ATCATGCTATCTCTTTGGATT up 1 1


Secondary structure

TCATAGCAACTAGAGGAAGGATCCAAAGGGATCGCATTGATCCTAATTAAGGTGAATTCTCCCCATATTTTCTTTATAATTGGCAAATAAATCACAAAAATTTGCTTGGTTTTGGATCATGCTATCTCTTTGGATTCATCCTTCGGTAGCTTCC
---------------------TCCAAAGGGATCGCATTGATCC 	7
--------------------------------------------------------------------------------------------------------------------------TATCTCTTTGGATTCATCCTT 	1

Overlaps with: MNEST047214
Overlaps with miRBase pre-miRNAs: ath-MIR393a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415785 TCCAAAGGGATCGCATTGATCC ATCATGCGATCTCTTTGGATT up 0 1


Secondary structure

TCACAGCAACTAGAGAAAGGATCCAAAGGGATCGCATTGATCCTAATTAAGCTGATTTATTCCCCAATAATTGTTTTTTTTTTCCTTCTCAATCGAAAGATGGAAGAAAAACAAATTCCAAACATTTTGCTTACTTTTCCGGATCATGCGATCTCTTTGGATTCATTCTTTGGTAGCTTCC
---------------------TCCAAAGGGATCGCATTGATCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------ATCATGCGATCTCTTTGGATT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM277608 TCCAAAGGGATCGCATTGATCC ATCATGCTATCTCTTTGGATT up 1 1


Secondary structure

TCATAGCAACTAGAGGAAGGATCCAAAGGGATCGCATTGATCCTAATTAAGGTGAATTCTCCCCATATTTTCTTTATAATTGGCAAATAAATCACAAAAATTTGCTTGGTTTTGGATCATGCTATCTCTTTGGATTCATCCTTCGGTAGCTTCC
---------------------TCCAAAGGGATCGCATTGATC 	1
---------------------TCCAAAGGGATCGCATTGATCC 	23
---------------------TCCAAAGGGATCGCATTGA 	1
-------------------------------------------------------------------------------------------------------------------ATCATGCTATCTCTTTGGATT 	1

Overlaps with: MNEST047214
Overlaps with miRBase pre-miRNAs: ath-MIR393a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM277608 TCCAAAGGGATCGCATTGATCC ATCATGCGATCTCTTTGGATT up 0 1


Secondary structure

TCACAGCAACTAGAGAAAGGATCCAAAGGGATCGCATTGATCCTAATTAAGCTGATTTATTCCCCAATAATTGTTTTTTTTTTCCTTCTCAATCGAAAGATGGAAGAAAAACAAATTCCAAACATTTTGCTTACTTTTCCGGATCATGCGATCTCTTTGGATTCATTCTTTGGTAGCTTCC
---------------------TCCAAAGGGATCGCATTGATC 	1
---------------------TCCAAAGGGATCGCATTGATCC 	23
---------------------TCCAAAGGGATCGCATTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------ATCATGCGATCTCTTTGGAT 	1


HuntMi prediction: true miRNA