miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCCAAAGGGATCGCATTGATCC

selected species: Vitis vinifera

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458930-2718	TCCAAAGGGATCGCATTGATCC	ATCATGCTATCCCTTAGGAAC	up	2	1

Secondary structure

AGCTCCTCTTCTTCTTGTTGTTGTTGGTGCAGGTGGACAGTTCCAAAGGGATCGCATTGATCCCATGGTTATCTTCCACCTCTCTTACCAGACTATCATAACAAAGTCTGGCCTTTTTCCCATTGGATCATGCTATCCCTTAGGAACTCTCCATCAGTGCCTCTTTCTCAGCATCTCCCACCTCC
----------------------------------------TTCCAAAGGGATCGCATTGATC 	1
-----------------------------------------TCCAAAGGGATCGCATTGATCC 	12
-----------------------------------------TCCAAAGGGATCGCATTGATC 	1
-----------------------------------------TCCAAAGGGATCGCATTGAT 	5
------------------------------------------------------------------------------------------------------------------------------ATCATGCTATCCCTTAGGAAC 	1

Overlaps with: MNEST041641 MNEST054849
Overlaps with miRBase pre-miRNAs: vvi-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458930-2718	TCCAAAGGGATCGCATTGATCC	ATCATGCTATCCCTTTGGATT	up	1	1

Secondary structure

TTCCTTGTTTCTACTGCAACTGGAGGAGGCATCCAAAGGGATCGCATTGATCCCAAACTCTCCATGTCTTTGGATCATGCTATCCCTTTGGATTCCTCCTTTGGTAGCTTCTTACTTGGGCT
----------------CAACTGGAGGAGGCATCCAAA 	3
----------------CAACTGGAGGAGGCATCCAA 	1
-------------------------------TCCAAAGGGATCGCATTGATCC 	12
-------------------------------TCCAAAGGGATCGCATTGATC 	1
-------------------------------TCCAAAGGGATCGCATTGAT 	5

Overlaps with: MNEST041642 MNEST054850
Overlaps with miRBase pre-miRNAs: vvi-MIR393b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458929-2717	TCCAAAGGGATCGCATTGATCC	ATCATGCTATCCCTTAGGAAC	up	2	1

Secondary structure

AGCTCCTCTTCTTCTTGTTGTTGTTGGTGCAGGTGGACAGTTCCAAAGGGATCGCATTGATCCCATGGTTATCTTCCACCTCTCTTACCAGACTATCATAACAAAGTCTGGCCTTTTTCCCATTGGATCATGCTATCCCTTAGGAACTCTCCATCAGTGCCTCTTTCTCAGCATCTCCCACCTCC
-----------------------------------------TCCAAAGGGATCGCATTGATCC 	32
-----------------------------------------TCCAAAGGGATCGCATTGATC 	5
-----------------------------------------TCCAAAGGGATCGCATTGAT 	8
-----------------------------------------TCCAAAGGGATCGCATTGA 	1
-------------------------------------------CAAAGGGATCGCATTGATCC 	2
------------------------------------------------------------------------------------------------------------------------------ATCATGCTATCCCTTAGGAAC 	1

Overlaps with: MNEST041641 MNEST054849
Overlaps with miRBase pre-miRNAs: vvi-MIR393a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458929-2717	TCCAAAGGGATCGCATTGATCC	ATCATGCTATCCCTTTGGATT	up	1	1

Secondary structure

TTCCTTGTTTCTACTGCAACTGGAGGAGGCATCCAAAGGGATCGCATTGATCCCAAACTCTCCATGTCTTTGGATCATGCTATCCCTTTGGATTCCTCCTTTGGTAGCTTCTTACTTGGGCT
----------------CAACTGGAGGAGGCATCCAAA 	3
--------------------TGGAGGAGGCATCCAAAGGGAT 	1
-------------------------------TCCAAAGGGATCGCATTGATCC 	32
-------------------------------TCCAAAGGGATCGCATTGATC 	5
-------------------------------TCCAAAGGGATCGCATTGAT 	8
-------------------------------TCCAAAGGGATCGCATTGA 	1
---------------------------------CAAAGGGATCGCATTGATCC 	2

Overlaps with: MNEST041642 MNEST054850
Overlaps with miRBase pre-miRNAs: vvi-MIR393b
HuntMi prediction: true miRNA