miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCACAGGCTTTCTTGAACTG

selected species: Oryza sativa



26 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTG 	408
---------------------TCCACAGGCTTTCTTGAAC 	10
---------------------TCCACAGGCTTTCTTGAACTGTGA 	5
---------------------TCCACAGGCTTTCTTGAACT 	3
---------------------TCCACAGGCTTTCTTGAACTGT 	1
-----------------------CACAGGCTTTCTTGAACTG 	13
------------------------ACAGGCTTTCTTGAACTGTGA 	58
-------------------------CAGGCTTTCTTGAACTGTGA 	2
--------------------------AGGCTTTCTTGAACTGTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	10


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACTG 	408
-----------TCCACAGGCTTTCTTGAAC 	10
-----------TCCACAGGCTTTCTTGAACTGTGA 	5
-----------TCCACAGGCTTTCTTGAACT 	3
-----------TCCACAGGCTTTCTTGAACTGT 	1
-------------CACAGGCTTTCTTGAACTG 	13
--------------ACAGGCTTTCTTGAACTGTGA 	58
---------------CAGGCTTTCTTGAACTGTGA 	2
----------------AGGCTTTCTTGAACTGTGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM571078-22531 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
--------------------TTCCACAGGCTTTCTTGAA 	1
---------------------TCCACAGGCTTTCTTGAACTG 	544
---------------------TCCACAGGCTTTCTTGAAC 	16
---------------------TCCACAGGCTTTCTTGAACTGT 	4
---------------------TCCACAGGCTTTCTTGAACTGTGA 	4
---------------------TCCACAGGCTTTCTTGAACT 	1
----------------------CCACAGGCTTTCTTGAACTG 	1
-----------------------CACAGGCTTTCTTGAACTG 	160
-----------------------CACAGGCTTTCTTGAACTGTGA 	3
-----------------------CACAGGCTTTCTTGAACTGT 	1
------------------------ACAGGCTTTCTTGAACTGTGA 	94
------------------------ACAGGCTTTCTTGAACTGTGAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATGGTTCAAGAAAGCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	21
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM571078-22531 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACTG 	544
-----------TCCACAGGCTTTCTTGAAC 	16
-----------TCCACAGGCTTTCTTGAACTGT 	4
-----------TCCACAGGCTTTCTTGAACTGTGA 	4
-----------TCCACAGGCTTTCTTGAACT 	1
------------CCACAGGCTTTCTTGAACTG 	1
-------------CACAGGCTTTCTTGAACTG 	160
-------------CACAGGCTTTCTTGAACTGTGA 	3
-------------CACAGGCTTTCTTGAACTGT 	1
--------------ACAGGCTTTCTTGAACTGTGA 	94
--------------ACAGGCTTTCTTGAACTGTGAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	52
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	18
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	9
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	5
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAAA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520638-18676 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTGTGA 	6
---------------------TCCACAGGCTTTCTTGAACTGTGAAC 	1
---------------------TCCACAGGCTTTCTTGAACTG 	46985
---------------------TCCACAGGCTTTCTTGAACT 	2960
---------------------TCCACAGGCTTTCTTGAACTGTG 	10
---------------------TCCACAGGCTTTCTTGAACTGT 	32
---------------------TCCACAGGCTTTCTTGAACTGTGAA 	1
---------------------TCCACAGGCTTTCTTGAAC 	16
----------------------CCACAGGCTTTCTTGAACTG 	50
----------------------CCACAGGCTTTCTTGAACT 	4
-----------------------CACAGGCTTTCTTGAACTGT 	1
-----------------------CACAGGCTTTCTTGAACTG 	402
------------------------ACAGGCTTTCTTGAACTGTGA 	28
-------------------------CAGGCTTTCTTGAACTGTGAA 	1
-------------------------CAGGCTTTCTTGAACTGTGA 	6
-------------------------CAGGCTTTCTTGAACTGTG 	1
--------------------------AGGCTTTCTTGAACTGTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATGGTTCAAGAAAGCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGGTTCAAGAAAGCCCA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGTTCAAGAAAGCCCATGGAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGG 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCAT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	83
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTCAAGAAAGCCCATGGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTCAAGAAAGCCCATGGAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	59
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAAA 	25
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCCCATGGAAA 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520638-18676 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
--------CTCTCCACAGGCTTTCTTGAACTG 	2
---------TCTCCACAGGCTTTCTTGAACTG 	4
----------CTCCACAGGCTTTCTTGAA 	1
----------CTCCACAGGCTTTCTTGAACT 	2
----------CTCCACAGGCTTTCTTGAACTG 	33
----------CTCCACAGGCTTTCTTGAACTGTG 	1
-----------TCCACAGGCTTTCTTGAACTGTGA 	6
-----------TCCACAGGCTTTCTTGAACTGTGAAC 	1
-----------TCCACAGGCTTTCTTGAACTG 	46985
-----------TCCACAGGCTTTCTTGAACT 	2960
-----------TCCACAGGCTTTCTTGAACTGTG 	10
-----------TCCACAGGCTTTCTTGAACTGT 	32
-----------TCCACAGGCTTTCTTGAACTGTGAA 	1
-----------TCCACAGGCTTTCTTGAAC 	16
------------CCACAGGCTTTCTTGAACTG 	50
------------CCACAGGCTTTCTTGAACT 	4
-------------CACAGGCTTTCTTGAACTGT 	1
-------------CACAGGCTTTCTTGAACTG 	402
--------------ACAGGCTTTCTTGAACTGTGA 	28
---------------CAGGCTTTCTTGAACTGTGAA 	1
---------------CAGGCTTTCTTGAACTGTGA 	6
---------------CAGGCTTTCTTGAACTGTG 	1
----------------AGGCTTTCTTGAACTGTGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAG 	2
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGTC 	144
-----------------------------------------------------------------------------------------------------------------------------------------------TTGATAGTTCAAGAAAGTC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	44
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	16
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	14
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	35
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGA 	7
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAAA 	13
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAA 	8
----------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAAGAAAGTCCTTGGAAA 	11
----------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAAGAAAGTCCTTGGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGA 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAA 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAA 	282
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	245
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAAA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGTCCTTGGAAA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGTCCTTGGAAAACA 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686040-31373 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTG 	46
---------------------TCCACAGGCTTTCTTGAACT 	3
---------------------TCCACAGGCTTTCTTGAAC 	2
------------------------ACAGGCTTTCTTGAACTGTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTCAAGAAAGCCCATGGAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM686040-31373 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACTG 	46
-----------TCCACAGGCTTTCTTGAACT 	3
-----------TCCACAGGCTTTCTTGAAC 	2
--------------ACAGGCTTTCTTGAACTGTGA 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520640-18679 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
-------------------TTTCCACAGGCTTTCTTGAACTG 	1
--------------------TTCCACAGGCTTTCTTGAACTG 	2
--------------------TTCCACAGGCTTTCTTGAACT 	6
---------------------TCCACAGGCTTTCTTGAAC 	15
---------------------TCCACAGGCTTTCTTGAACTGTGA 	22
---------------------TCCACAGGCTTTCTTGAACTG 	43535
---------------------TCCACAGGCTTTCTTGAACT 	2009
---------------------TCCACAGGCTTTCTTGAACTGTG 	8
---------------------TCCACAGGCTTTCTTGAACTGT 	21
----------------------CCACAGGCTTTCTTGAACTG 	52
----------------------CCACAGGCTTTCTTGAACT 	1
-----------------------CACAGGCTTTCTTGAACTG 	340
------------------------ACAGGCTTTCTTGAACTGTGA 	30
------------------------ACAGGCTTTCTTGAACTGTGAA 	1
------------------------ACAGGCTTTCTTGAACTGTG 	1
-------------------------CAGGCTTTCTTGAACTGTGA 	7
-----------------------------CTTTCTTGAACTGTGAACTCG 	1
--------------------------------TCTTGAACTGTGAACTCGTGG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGATGGTTCAAGAAAGCC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAAC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGG 	10
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAA 	11
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	263
-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTCAAGAAAGCCCATGGAA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	72
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGA 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAA 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAAA 	26
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCCCATGGAAA 	2


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM520640-18679 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-------GCTCTCCACAGGCTTTCTTGAACTG 	1
---------TCTCCACAGGCTTTCTTGAACTG 	7
---------TCTCCACAGGCTTTCTTGAACT 	1
----------CTCCACAGGCTTTCTTGAACT 	1
----------CTCCACAGGCTTTCTTGAACTG 	36
-----------TCCACAGGCTTTCTTGAAC 	15
-----------TCCACAGGCTTTCTTGAACTGTGA 	22
-----------TCCACAGGCTTTCTTGAACTG 	43535
-----------TCCACAGGCTTTCTTGAACT 	2009
-----------TCCACAGGCTTTCTTGAACTGTG 	8
-----------TCCACAGGCTTTCTTGAACTGT 	21
------------CCACAGGCTTTCTTGAACTG 	52
------------CCACAGGCTTTCTTGAACT 	1
-------------CACAGGCTTTCTTGAACTG 	340
--------------ACAGGCTTTCTTGAACTGTGA 	30
--------------ACAGGCTTTCTTGAACTGTGAA 	1
--------------ACAGGCTTTCTTGAACTGTG 	1
---------------CAGGCTTTCTTGAACTGTGA 	7
-------------------CTTTCTTGAACTGTGAACTCG 	1
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGTC 	236
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGT 	1
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAG 	6
-----------------------------------------------------------------------------------------------------------------------------------------------TTGATAGTTCAAGAAAGTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------TGATAGTTCAAGAAAGTCCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------GATAGTTCAAGAAAGTCCTTGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	285
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	32
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	23
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	74
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTG 	6
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGA 	22
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAAA 	3
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAA 	17
----------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAAGAAAGTCCTTGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAAGAAAGTCCTTGGAAA 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGA 	8
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAA 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAA 	346
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	475
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAAA 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGTCCTTGGAAA 	6


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM571077-22529 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTG 	497
---------------------TCCACAGGCTTTCTTGAAC 	18
---------------------TCCACAGGCTTTCTTGAACT 	7
---------------------TCCACAGGCTTTCTTGAACTGTGA 	5
---------------------TCCACAGGCTTTCTTGAACTGT 	1
----------------------CCACAGGCTTTCTTGAACTG 	2
-----------------------CACAGGCTTTCTTGAACTG 	95
------------------------ACAGGCTTTCTTGAACTGTGA 	105
------------------------ACAGGCTTTCTTGAACTGTGAA 	1
-------------------------CAGGCTTTCTTGAACTGTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	12
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAAA 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM571077-22529 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACTG 	497
-----------TCCACAGGCTTTCTTGAAC 	18
-----------TCCACAGGCTTTCTTGAACT 	7
-----------TCCACAGGCTTTCTTGAACTGTGA 	5
-----------TCCACAGGCTTTCTTGAACTGT 	1
------------CCACAGGCTTTCTTGAACTG 	2
-------------CACAGGCTTTCTTGAACTG 	95
--------------ACAGGCTTTCTTGAACTGTGA 	105
--------------ACAGGCTTTCTTGAACTGTGAA 	1
---------------CAGGCTTTCTTGAACTGTGA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	17
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	6
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	4


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM686039-31370 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTGTGA 	2
---------------------TCCACAGGCTTTCTTGAACTG 	38
-----------------------CACAGGCTTTCTTGAACTG 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM686039-31370 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACTGTGA 	2
-----------TCCACAGGCTTTCTTGAACTG 	38
-------------CACAGGCTTTCTTGAACTG 	4


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM520634-18667 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACT 	13
---------------------TCCACAGGCTTTCTTGAACTGT 	2
---------------------TCCACAGGCTTTCTTGAACTG 	928
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGCCCATGGAAACCATGCC 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM520634-18667 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACT 	13
-----------TCCACAGGCTTTCTTGAACTGT 	2
-----------TCCACAGGCTTTCTTGAACTG 	928
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	10
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGTCCTTGGAAAACATGGT 	4


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM520636-18672 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTG 	786
---------------------TCCACAGGCTTTCTTGAACT 	36
---------------------TCCACAGGCTTTCTTGAAC 	1
-----------------------CACAGGCTTTCTTGAACTG 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGCCCATGGAAACCATGCC 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM520636-18672 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----ATGCTCTCCACAGGCTTTCTTGA 	1
-----------TCCACAGGCTTTCTTGAACTG 	786
-----------TCCACAGGCTTTCTTGAACT 	36
-----------TCCACAGGCTTTCTTGAAC 	1
-------------CACAGGCTTTCTTGAACTG 	4
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	5
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGTCCTTGGAAAACATGGT 	6


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM520635-18669 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTGTGA 	1
---------------------TCCACAGGCTTTCTTGAACTG 	406
---------------------TCCACAGGCTTTCTTGAACT 	16
---------------------TCCACAGGCTTTCTTGAACTGTGAA 	1
-----------------------CACAGGCTTTCTTGAACTG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGTTCAAGAAAGCCCATGGAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAA 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	152
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAAC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGA 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGG 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	5


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM520635-18669 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
-----------TCCACAGGCTTTCTTGAACTGTGA 	1
-----------TCCACAGGCTTTCTTGAACTG 	406
-----------TCCACAGGCTTTCTTGAACT 	16
-----------TCCACAGGCTTTCTTGAACTGTGAA 	1
-------------CACAGGCTTTCTTGAACTG 	3
-------------------------------------------------------------------------------------------------------------------------------------------------GATAGTTCAAGAAAGTCCTTGGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	253
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	5
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	20
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	3
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTG 	3
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAAA 	19
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAA 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM520637-18674 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTGTGA 	8
---------------------TCCACAGGCTTTCTTGAACTGTGAAC 	2
---------------------TCCACAGGCTTTCTTGAACTG 	14298
---------------------TCCACAGGCTTTCTTGAACT 	2309
---------------------TCCACAGGCTTTCTTGAACTGTG 	5
---------------------TCCACAGGCTTTCTTGAACTGT 	21
---------------------TCCACAGGCTTTCTTGAACTGTGAA 	2
---------------------TCCACAGGCTTTCTTGAAC 	8
----------------------CCACAGGCTTTCTTGAACTG 	21
----------------------CCACAGGCTTTCTTGAACT 	1
-----------------------CACAGGCTTTCTTGAACTG 	141
------------------------ACAGGCTTTCTTGAACTGT 	1
------------------------ACAGGCTTTCTTGAACTGTGA 	16
------------------------ACAGGCTTTCTTGAACTGTG 	1
-------------------------CAGGCTTTCTTGAACTGTGA 	10
--------------------------------TCTTGAACTGTGAACTCGTGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	60
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAAA 	12


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM520637-18674 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
--------CTCTCCACAGGCTTTCTTGAA 	1
---------TCTCCACAGGCTTTCTTGAACTG 	2
----------CTCCACAGGCTTTCTTGAACT 	6
----------CTCCACAGGCTTTCTTGAACTG 	13
-----------TCCACAGGCTTTCTTGAACTGTGA 	8
-----------TCCACAGGCTTTCTTGAACTGTGAAC 	2
-----------TCCACAGGCTTTCTTGAACTG 	14298
-----------TCCACAGGCTTTCTTGAACT 	2309
-----------TCCACAGGCTTTCTTGAACTGTG 	5
-----------TCCACAGGCTTTCTTGAACTGT 	21
-----------TCCACAGGCTTTCTTGAACTGTGAA 	2
-----------TCCACAGGCTTTCTTGAAC 	8
------------CCACAGGCTTTCTTGAACTG 	21
------------CCACAGGCTTTCTTGAACT 	1
-------------CACAGGCTTTCTTGAACTG 	141
--------------ACAGGCTTTCTTGAACTGT 	1
--------------ACAGGCTTTCTTGAACTGTGA 	16
--------------ACAGGCTTTCTTGAACTGTG 	1
---------------CAGGCTTTCTTGAACTGTGA 	10
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGTC 	71
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGT 	3
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAG 	2
-----------------------------------------------------------------------------------------------------------------------------------------------TTGATAGTTCAAGAAAGTCCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	74
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	13
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	6
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	31
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGA 	6
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAA 	4
----------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAAGAAAGTCCTTGGAAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAA 	32
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	124
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAAA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGTCCTTGGAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGTCCTTGGAAAAC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGTCCTTGGAAAACATGGT 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM693279 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
---------------------TCCACAGGCTTTCTTGAACTG 	411
---------------------TCCACAGGCTTTCTTGAAC 	16
---------------------TCCACAGGCTTTCTTGAACTGTGA 	5
---------------------TCCACAGGCTTTCTTGAACT 	2
----------------------CCACAGGCTTTCTTGAACTG 	1
-----------------------CACAGGCTTTCTTGAACTG 	15
-----------------------CACAGGCTTTCTTGAACTGTGA 	1
------------------------ACAGGCTTTCTTGAACTGTGA 	71
------------------------ACAGGCTTTCTTGAACTGTGAA 	2
-------------------------CAGGCTTTCTTGAACTGTGA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	2


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Oryza sativa GSM693279 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
----------CTCCACAGGCTTTCTTGAACTG 	1
-----------TCCACAGGCTTTCTTGAACTG 	411
-----------TCCACAGGCTTTCTTGAAC 	16
-----------TCCACAGGCTTTCTTGAACTGTGA 	5
-----------TCCACAGGCTTTCTTGAACT 	2
------------CCACAGGCTTTCTTGAACTG 	1
-------------CACAGGCTTTCTTGAACTG 	15
-------------CACAGGCTTTCTTGAACTGTGA 	1
--------------ACAGGCTTTCTTGAACTGTGA 	71
--------------ACAGGCTTTCTTGAACTGTGAA 	2
---------------CAGGCTTTCTTGAACTGTGA 	2
------------------------------------------------------------------------------------------------------------TTAGGTCATCGATGCGCATC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	2


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Oryza sativa GSM520639-18678 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGCCCATGGAAA up 2 0


Secondary structure

GAAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTCTGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTGGTCGTCTCTACCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCGTCTTTGTG
--------------------TTCCACAGGCTTTCTTGAACT 	3
---------------------TCCACAGGCTTTCTTGAAC 	11
---------------------TCCACAGGCTTTCTTGAACTGTGA 	11
---------------------TCCACAGGCTTTCTTGAACTGT 	10
---------------------TCCACAGGCTTTCTTGAACTG 	132982
---------------------TCCACAGGCTTTCTTGAACT 	3184
---------------------TCCACAGGCTTTCTTGAACTGTG 	3
----------------------CCACAGGCTTTCTTGAACT 	5
----------------------CCACAGGCTTTCTTGAACTG 	118
-----------------------CACAGGCTTTCTTGAACTG 	957
------------------------ACAGGCTTTCTTGAACTGTGA 	28
-------------------------CAGGCTTTCTTGAACTGTGA 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGA 	14
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGG 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAAC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTTCAAGAAAGCCCATGGAAA 	70
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAAA 	41
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGA 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGCCCATGGAA 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGCCCATGGAAA 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCCCATGGAAA 	1


Overlaps with: MNEST042029 MNEST048948
Overlaps with miRBase pre-miRNAs: osa-MIR396e osa-MIR396d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Oryza sativa GSM520639-18678 TCCACAGGCTTTCTTGAACTG GTTCAAGAAAGTCCTTGGAAA up 0 2


Secondary structure

CGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTG
------TGCTCTCCACAGGCTTTCTTGAACTG 	4
---------TCTCCACAGGCTTTCTTGAACTG 	19
----------CTCCACAGGCTTTCTTGAACTG 	99
-----------TCCACAGGCTTTCTTGAAC 	11
-----------TCCACAGGCTTTCTTGAACTGTGA 	11
-----------TCCACAGGCTTTCTTGAACTGT 	10
-----------TCCACAGGCTTTCTTGAACTG 	132982
-----------TCCACAGGCTTTCTTGAACT 	3184
-----------TCCACAGGCTTTCTTGAACTGTG 	3
------------CCACAGGCTTTCTTGAACT 	5
------------CCACAGGCTTTCTTGAACTG 	118
-------------CACAGGCTTTCTTGAACTG 	957
--------------ACAGGCTTTCTTGAACTGTGA 	28
---------------CAGGCTTTCTTGAACTGTGA 	5
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGT 	2
---------------------------------------------------------------------------------------------------------------------------------------------TGTTGATAGTTCAAGAAAGTC 	19
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGG 	34
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGA 	12
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAA 	9
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAAA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTCAAGAAAGTCCTTGGAAA 	153
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGA 	13
---------------------------------------------------------------------------------------------------------------------------------------------------TAGTTCAAGAAAGTCCTTGGAA 	4
----------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAAGAAAGTCCTTGGAAA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAAA 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAA 	14
-----------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAGAAAGTCCTTGGAAA 	221
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAA 	184
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGAAAGTCCTTGGAA 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGTCCTTGGAAA 	1


Overlaps with: MNEST042032 MNEST042033 MNEST048952 MNEST048953 MNEST048954
Overlaps with miRBase pre-miRNAs: osa-MIR396f
HuntMi prediction: true miRNA