miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCATTACACTACCCTGCCTCT

selected species: Homo sapiens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM531986-13294 TCCATTACACTACCCTGCCTCT AGGCAGCGGGGTGTAGTGGATA up 0 2


Secondary structure

CCCGCACTCTCTCCATTACACTACCCTGCCTCTTCTCCATGAGAGGCAGCGGGGTGTAGTGGATAGAGCACGG
----------CTCCATTACACTACCCTGCC 	3
----------CTCCATTACACTACCCTGCCT 	3
----------CTCCATTACACTACCCTGCCTCT 	2
----------CTCCATTACACTACCCTGCCTC 	1
-----------TCCATTACACTACCCTGCCTCTT 	63
-----------TCCATTACACTACCCTGCCTCT 	1297
-----------TCCATTACACTACCCTGCCTC 	358
-----------TCCATTACACTACCCTGCCT 	338
-----------TCCATTACACTACCCTGCC 	160
-----------TCCATTACACTACCCTGCCTCTTCTC 	4
------------CCATTACACTACCCTGCCTCTTCTCC 	1
-------------CATTACACTACCCTGCCTCT 	51
-------------CATTACACTACCCTGCCTC 	30
-------------CATTACACTACCCTGCCTCTTCT 	1
-------------CATTACACTACCCTGCCTCTT 	1
--------------ATTACACTACCCTGCCTCT 	1
--------------------------------------ATGAGAGGCAGCGGGGTGTAG 	1
--------------------------------------ATGAGAGGCAGCGGGGTGTAGTG 	1
--------------------------------------ATGAGAGGCAGCGGGGTGTAGTGGAT 	1
--------------------------------------ATGAGAGGCAGCGGGGTGTA 	1
--------------------------------------ATGAGAGGCAGCGGGGTGTAGT 	1
-----------------------------------------AGAGGCAGCGGGGTGTAGTGG 	4
-----------------------------------------AGAGGCAGCGGGGTGTAGTGGA 	1
-----------------------------------------AGAGGCAGCGGGGTGTAGTG 	1
-----------------------------------------AGAGGCAGCGGGGTGTAGT 	1
-------------------------------------------AGGCAGCGGGGTGTAGTGGATA 	32
-------------------------------------------AGGCAGCGGGGTGTAGTGGAT 	67
-------------------------------------------AGGCAGCGGGGTGTAGTGG 	76
-------------------------------------------AGGCAGCGGGGTGTAGTGGA 	21
--------------------------------------------GGCAGCGGGGTGTAGTGGAT 	1



Overlaps with miRBase pre-miRNAs: ggo-mir-885
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531975 TCCATTACACTACCCTGCCTCT AGGCAGCGGGGTGTAGTGGATA up 0 2


Secondary structure

CCCGCACTCTCTCCATTACACTACCCTGCCTCTTCTCCATGAGAGGCAGCGGGGTGTAGTGGATAGAGCACGG
----------CTCCATTACACTACCCTGC 	1
-----------TCCATTACACTACCCTGCCTCT 	153
-----------TCCATTACACTACCCTGCCTC 	43
-----------TCCATTACACTACCCTGCCT 	39
-----------TCCATTACACTACCCTGCC 	16
-----------TCCATTACACTACCCTGCCTCTT 	3
-------------CATTACACTACCCTGCCTCT 	15
-------------CATTACACTACCCTGCCTC 	12
-------------CATTACACTACCCTGCCTCTT 	2
--------------ATTACACTACCCTGCCTCT 	1
-------------------------------------------AGGCAGCGGGGTGTAGTGGATA 	26
-------------------------------------------AGGCAGCGGGGTGTAGTGGAT 	20
-------------------------------------------AGGCAGCGGGGTGTAGTGG 	11
-------------------------------------------AGGCAGCGGGGTGTAGTGGA 	4
-------------------------------------------AGGCAGCGGGGTGTAGTGGATAGA 	2



Overlaps with miRBase pre-miRNAs: ggo-mir-885
HuntMi prediction: true miRNA