miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCCCAGTCCAGGCATTCCAAC

selected species: Solanum lycopersicum



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TCCCCAGTCCAGGCATTCCAAC TGGTATGCTTTGATTGGGAAAG up 4 0


Secondary structure

CCACATGAAGTAGCTTGACCAAAATTCTTCTTCCCCAGTCCAGGCATTCCAACAGTTGATAACATCTAGATCTGCCAATACTTTGTATTTTTGTTCTTCTATTTTTCACATGACATCTTCAAAATCTACTATGAGCTTCATCATAAGCTAAGAAATGGTGAGTTTTGATGATGTGATGCCTAAAATAGGATTAAATGAAAGTACTAGTAAAAAGGTGTTCAGATCTGGAGGTTATGTTAAGCTGGTGGTATGCTTTGATTGGGAAAGATGACTTAGGTCAAAATAAATATATCCA
-------------------------------TCCCCAGTCCAGGCATTCCAACA 	7
-------------------------------TCCCCAGTCCAGGCATTCCAAC 	61
-------------------------------TCCCCAGTCCAGGCATTCCAA 	2
--------------------------------CCCCAGTCCAGGCATTCCAAC 	2
---------------------------------CCCAGTCCAGGCATTCCAAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTATGCTTTGATTGGGAAA 	1

Overlaps with: MNEST041556
Overlaps with miRBase pre-miRNAs: sly-MIR5300
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304986 TCCCCAGTCCAGGCATTCCAAC TGGTATGCTTTGATTGGGAAAG up 4 0


Secondary structure

CCACATGAAGTAGCTTGACCAAAATTCTTCTTCCCCAGTCCAGGCATTCCAACAGTTGATAACATCTAGATCTGCCAATACTTTGTATTTTTGTTCTTCTATTTTTCACATGACATCTTCAAAATCTACTATGAGCTTCATCATAAGCTAAGAAATGGTGAGTTTTGATGATGTGATGCCTAAAATAGGATTAAATGAAAGTACTAGTAAAAAGGTGTTCAGATCTGGAGGTTATGTTAAGCTGGTGGTATGCTTTGATTGGGAAAGATGACTTAGGTCAAAATAAATATATCCA
-------------------------------TCCCCAGTCCAGGCATTCCAAC 	123
-------------------------------TCCCCAGTCCAGGCATTCCAA 	4
-------------------------------TCCCCAGTCCAGGCATTCCA 	2
--------------------------------CCCCAGTCCAGGCATTCCAAC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTATGCTTTGATTGGGAAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTATGCTTTGATTGGGAA 	1

Overlaps with: MNEST041556
Overlaps with miRBase pre-miRNAs: sly-MIR5300
HuntMi prediction: true miRNA