miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCCTCAAAGGCTTCCAACAA

selected species: Physcomitrella patens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 TCCCTCAAAGGCTTCCAACAA GTCGGAAGCCTTCGAGGGAGA up 3 0


Secondary structure

ATTCTTGCGGCGGATTGTTGATATTCGGGTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCGGAAGCCTTCGAGGGAGATGAAAGAATTTCCTGTTTTTCGAGTGTTCTGGCTGAGC
---------------------------------------TCTCCCTCAAAGGCTTCCAAC 	5
---------------------------------------TCTCCCTCAAAGGCTTCCAA 	106
---------------------------------------TCTCCCTCAAAGGCTTCCA 	22
-----------------------------------------TCCCTCAAAGGCTTCCAACAACA 	9
-----------------------------------------TCCCTCAAAGGCTTCCAAC 	5
-----------------------------------------TCCCTCAAAGGCTTCCAACA 	26
-----------------------------------------TCCCTCAAAGGCTTCCAACAAC 	14
-----------------------------------------TCCCTCAAAGGCTTCCAACAA 	183
------------------------------------------CCCTCAAAGGCTTCCAACAA 	1
------------------------------------------CCCTCAAAGGCTTCCAACAACA 	3
------------------------------------------CCCTCAAAGGCTTCCAACA 	2
------------------------------------------CCCTCAAAGGCTTCCAACAAC 	1
--------------------------------------------------------------------------------------------------------------------------CTGTCGGAAGCCTTCGAGGGAG 	1
--------------------------------------------------------------------------------------------------------------------------CTGTCGGAAGCCTTCGAGGGAGA 	3
---------------------------------------------------------------------------------------------------------------------------TGTCGGAAGCCTTCGAGGGAGA 	8
----------------------------------------------------------------------------------------------------------------------------GTCGGAAGCCTTCGAGGGAGA 	18
-----------------------------------------------------------------------------------------------------------------------------TCGGAAGCCTTCGAGGGAG 	1
-----------------------------------------------------------------------------------------------------------------------------TCGGAAGCCTTCGAGGGAGA 	19
------------------------------------------------------------------------------------------------------------------------------CGGAAGCCTTCGAGGGAGA 	3


Overlaps with: MNEST039499 MNEST051404
Overlaps with miRBase pre-miRNAs: ppt-MIR477f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313213 TCCCTCAAAGGCTTCCAACAA GTCGGAAGCCTTCGAGGGAGA up 3 0


Secondary structure

ATTCTTGCGGCGGATTGTTGATATTCGGGTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCGGAAGCCTTCGAGGGAGATGAAAGAATTTCCTGTTTTTCGAGTGTTCTGGCTGAGC
------------------------------------TTTTCTCCCTCAAAGGCTTCC 	1
---------------------------------------TCTCCCTCAAAGGCTTCCAAC 	10
---------------------------------------TCTCCCTCAAAGGCTTCCAA 	125
---------------------------------------TCTCCCTCAAAGGCTTCCA 	28
----------------------------------------CTCCCTCAAAGGCTTCCAA 	1
----------------------------------------CTCCCTCAAAGGCTTCCAACA 	1
-----------------------------------------TCCCTCAAAGGCTTCCAACAACA 	13
-----------------------------------------TCCCTCAAAGGCTTCCAACAACAG 	1
-----------------------------------------TCCCTCAAAGGCTTCCAACA 	35
-----------------------------------------TCCCTCAAAGGCTTCCAACAAC 	27
-----------------------------------------TCCCTCAAAGGCTTCCAACAA 	192
------------------------------------------CCCTCAAAGGCTTCCAACAA 	3
------------------------------------------CCCTCAAAGGCTTCCAACAACA 	1
------------------------------------------CCCTCAAAGGCTTCCAACAAC 	1
-------------------------------------------CCTCAAAGGCTTCCAACAA 	2
-----------------------------------------------AAAGGCTTCCAACAACAGGAGGGTA 	1
----------------------------------------------------CTTCCAACAACAGGAGGGTA 	1
-------------------------------------------------------------------------------------------------------------------------GCTGTCGGAAGCCTTCGAGGG 	1
--------------------------------------------------------------------------------------------------------------------------CTGTCGGAAGCCTTCGAGGGAGA 	3
---------------------------------------------------------------------------------------------------------------------------TGTCGGAAGCCTTCGAGGGAGA 	9
---------------------------------------------------------------------------------------------------------------------------TGTCGGAAGCCTTCGAGGGAG 	2
----------------------------------------------------------------------------------------------------------------------------GTCGGAAGCCTTCGAGGGAGA 	16
-----------------------------------------------------------------------------------------------------------------------------TCGGAAGCCTTCGAGGGAG 	1
-----------------------------------------------------------------------------------------------------------------------------TCGGAAGCCTTCGAGGGAGA 	19
------------------------------------------------------------------------------------------------------------------------------CGGAAGCCTTCGAGGGAGA 	2


Overlaps with: MNEST039499 MNEST051404
Overlaps with miRBase pre-miRNAs: ppt-MIR477f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313216 TCCCTCAAAGGCTTCCAACAAC TGTCGGAAGCCTTCGAGGGAGA up 3 0


Secondary structure

ATTCTTGCGGCGGATTGTTGATATTCGGGTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCGGAAGCCTTCGAGGGAGATGAAAGAATTTCCTGTTTTTCGAGTGTTCTGGCTGAGC
------------------------------------TTTTCTCCCTCAAAGGCTTCC 	1
--------------------------------------TTCTCCCTCAAAGGCTTCCAA 	1
---------------------------------------TCTCCCTCAAAGGCTTCCAAC 	72
---------------------------------------TCTCCCTCAAAGGCTTCCAA 	124
---------------------------------------TCTCCCTCAAAGGCTTCCA 	8
---------------------------------------TCTCCCTCAAAGGCTTCCAACA 	1
----------------------------------------CTCCCTCAAAGGCTTCCAA 	2
-----------------------------------------TCCCTCAAAGGCTTCCAACAACA 	4
-----------------------------------------TCCCTCAAAGGCTTCCAAC 	19
-----------------------------------------TCCCTCAAAGGCTTCCAACAACAG 	3
-----------------------------------------TCCCTCAAAGGCTTCCAACA 	10
-----------------------------------------TCCCTCAAAGGCTTCCAACAAC 	229
-----------------------------------------TCCCTCAAAGGCTTCCAACAA 	36
------------------------------------------CCCTCAAAGGCTTCCAACAAC 	18
-------------------------------------------CCTCAAAGGCTTCCAACAAC 	4
-------------------------------------------------------------------------------------------------------------------------GCTGTCGGAAGCCTTCGAGGGAGA 	1
--------------------------------------------------------------------------------------------------------------------------CTGTCGGAAGCCTTCGAGGGAGA 	5
---------------------------------------------------------------------------------------------------------------------------TGTCGGAAGCCTTCGAGGGAGA 	13
----------------------------------------------------------------------------------------------------------------------------GTCGGAAGCCTTCGAGGGAGA 	6
-----------------------------------------------------------------------------------------------------------------------------TCGGAAGCCTTCGAGGGAGA 	16
------------------------------------------------------------------------------------------------------------------------------CGGAAGCCTTCGAGGGAGA 	4


Overlaps with: MNEST039499 MNEST051404
Overlaps with miRBase pre-miRNAs: ppt-MIR477f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313217 TCCCTCAAAGGCTTCCAACAAC TGTCGGAAGCCTTCGAGGGAGA up 3 0


Secondary structure

ATTCTTGCGGCGGATTGTTGATATTCGGGTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCGGAAGCCTTCGAGGGAGATGAAAGAATTTCCTGTTTTTCGAGTGTTCTGGCTGAGC
------------------------------------TTTTCTCCCTCAAAGGCTTCC 	1
---------------------------------------TCTCCCTCAAAGGCTTCCAAC 	71
---------------------------------------TCTCCCTCAAAGGCTTCCAA 	132
---------------------------------------TCTCCCTCAAAGGCTTCCA 	11
----------------------------------------CTCCCTCAAAGGCTTCCAA 	2
-----------------------------------------TCCCTCAAAGGCTTCCAACAACA 	7
-----------------------------------------TCCCTCAAAGGCTTCCAAC 	6
-----------------------------------------TCCCTCAAAGGCTTCCAACA 	7
-----------------------------------------TCCCTCAAAGGCTTCCAACAAC 	237
-----------------------------------------TCCCTCAAAGGCTTCCAACAACAG 	3
-----------------------------------------TCCCTCAAAGGCTTCCAACAA 	31
------------------------------------------CCCTCAAAGGCTTCCAACAACA 	1
------------------------------------------CCCTCAAAGGCTTCCAACA 	1
------------------------------------------CCCTCAAAGGCTTCCAACAAC 	13
-------------------------------------------CCTCAAAGGCTTCCAACAAC 	2
-------------------------------------------------------------------------------------------------------------------------GCTGTCGGAAGCCTTCGAGGGAGA 	1
--------------------------------------------------------------------------------------------------------------------------CTGTCGGAAGCCTTCGAGGGA 	1
--------------------------------------------------------------------------------------------------------------------------CTGTCGGAAGCCTTCGAGGGAGA 	2
---------------------------------------------------------------------------------------------------------------------------TGTCGGAAGCCTTCGAGGGAGA 	5
----------------------------------------------------------------------------------------------------------------------------GTCGGAAGCCTTCGAGGGAGA 	13
----------------------------------------------------------------------------------------------------------------------------GTCGGAAGCCTTCGAGGGAG 	1
-----------------------------------------------------------------------------------------------------------------------------TCGGAAGCCTTCGAGGGAGA 	19
------------------------------------------------------------------------------------------------------------------------------CGGAAGCCTTCGAGGGAGA 	1
------------------------------------------------------------------------------------------------------------------------------CGGAAGCCTTCGAGGGAGAT 	1


Overlaps with: MNEST039499 MNEST051404
Overlaps with miRBase pre-miRNAs: ppt-MIR477f
HuntMi prediction: true miRNA