miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCCTCACGTGGTGTTTGCAGC

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCCCTCACGTGGTGTTTGCAGC TTGCAAACACCCGTATGGGACG up 2 2


Secondary structure

GGTTGTTGTCGTCCCTCACGTGGTGTTTGCAGCTAGGATGTCGGGAGGGGTCGATGTGTTGTGGAATGTTCCGCTCCTTGAAATTTGAGTGACCCTTACCGTCTGCCAGTGAGGCCGCTTGCAAACACCCGTATGGGACGACGAAGCT
-----------TCCCTCACGTGGTGTTTGCAGC 	8
-----------------------------------------------------------------------------------------------------------------------TGCAAACACCCGTATGGGACG 	1

Overlaps with: MNEST006964
Overlaps with miRBase pre-miRNAs: ppt-MIR1062
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115096 TCCCTCACGTGGTGTTTGCAGC TTGCAAACACCCGTATGGGACG up 2 2


Secondary structure

GGTTGTTGTCGTCCCTCACGTGGTGTTTGCAGCTAGGATGTCGGGAGGGGTCGATGTGTTGTGGAATGTTCCGCTCCTTGAAATTTGAGTGACCCTTACCGTCTGCCAGTGAGGCCGCTTGCAAACACCCGTATGGGACGACGAAGCT
-----------TCCCTCACGTGGTGTTTGCAGC 	5
-------------------------------------------------------------------------------------------------------------------------CAAACACCCGTATGGGACGAC 	1
-------------------------------------------------------------------------------------------------------------------------CAAACACCCGTATGGGACGA 	3

Overlaps with: MNEST006964
Overlaps with miRBase pre-miRNAs: ppt-MIR1062
HuntMi prediction: true miRNA