miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: TCCCTGAGACCCTAACTCGTGA

selected species: Danio rerio



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TCCCTGAGACCCTAACTCGTGA ACGGGTCAGGAGCTTGGGAGAC up 4 0


Secondary structure

TTATGGCTGCTCTCCTCCTGTTCCCTGAGACCCTAACTCGTGAGGTCTTTTTCCAAAATCACGGGTCAGGAGCTTGGGAGACAGGTGGAGGGCTTCAGCA
---------------------TCCCTGAGACCCTAACTCGTGA 	79
---------------------TCCCTGAGACCCTAACTCGTG 	5
---------------------TCCCTGAGACCCTAACTCGT 	1
-----------------------CCTGAGACCCTAACTCGTGA 	1
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGAC 	3
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGA 	5


Overlaps with: MNEST034282
Overlaps with miRBase pre-miRNAs: dre-mir-125c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TCCCTGAGACCCTAACTCGTGA ACGGGTCAGGAGCTTGGGAGAC up 4 0


Secondary structure

TTATGGCTGCTCTCCTCCTGTTCCCTGAGACCCTAACTCGTGAGGTCTTTTTCCAAAATCACGGGTCAGGAGCTTGGGAGACAGGTGGAGGGCTTCAGCA
---------------------TCCCTGAGACCCTAACTCGTG 	41
---------------------TCCCTGAGACCCTAACTCGT 	1
---------------------TCCCTGAGACCCTAACTCGTGA 	2420
-----------------------CCTGAGACCCTAACTCGTGA 	4
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGAC 	390
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGA 	19
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGACA 	11
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAG 	3
-------------------------------------------------------------CGGGTCAGGAGCTTGGGAGAC 	3
-------------------------------------------------------------CGGGTCAGGAGCTTGGGAG 	1


Overlaps with: MNEST034282
Overlaps with miRBase pre-miRNAs: dre-mir-125c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 TCCCTGAGACCCTAACTCGTGA ACGGGTCAGGAGCTTGGGAGAC up 4 0


Secondary structure

TTATGGCTGCTCTCCTCCTGTTCCCTGAGACCCTAACTCGTGAGGTCTTTTTCCAAAATCACGGGTCAGGAGCTTGGGAGACAGGTGGAGGGCTTCAGCA
---------------------TCCCTGAGACCCTAACTCGTGAGGT 	1
---------------------TCCCTGAGACCCTAACTCGTGA 	571
---------------------TCCCTGAGACCCTAACTCGTG 	94
---------------------TCCCTGAGACCCTAACTCGT 	15
----------------------CCCTGAGACCCTAACTCGTGA 	8
----------------------CCCTGAGACCCTAACTCGTG 	2
-----------------------CCTGAGACCCTAACTCGTGA 	2
-----------------------CCTGAGACCCTAACTCGTG 	4
------------------------CTGAGACCCTAACTCGTGA 	1
---------------------------AGACCCTAACTCGTGAGGTC 	1
-----------------------------------------------------CAAAATCACGGGTCAGGAGCTT 	1
------------------------------------------------------AAAATCACGGGTCAGGAGCTTGGG 	1
------------------------------------------------------AAAATCACGGGTCAGGAGCTTG 	1
-------------------------------------------------------AAATCACGGGTCAGGAGCTTGGG 	1
-----------------------------------------------------------CACGGGTCAGGAGCTTGGGAGAC 	1
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGACA 	2
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGAC 	6
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGA 	14
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAG 	2
-------------------------------------------------------------CGGGTCAGGAGCTTGGGAGA 	1


Overlaps with: MNEST034282
Overlaps with miRBase pre-miRNAs: dre-mir-125c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TCCCTGAGACCCTAACTCGTGA ACGGGTCAGGAGCTTGGGAGAC up 4 0


Secondary structure

TTATGGCTGCTCTCCTCCTGTTCCCTGAGACCCTAACTCGTGAGGTCTTTTTCCAAAATCACGGGTCAGGAGCTTGGGAGACAGGTGGAGGGCTTCAGCA
---------------------TCCCTGAGACCCTAACTCGTG 	16
---------------------TCCCTGAGACCCTAACTCGTGA 	183
-----------------------CCTGAGACCCTAACTCGTGA 	1
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGAC 	26
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGA 	6
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGACA 	1
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAG 	1


Overlaps with: MNEST034282
Overlaps with miRBase pre-miRNAs: dre-mir-125c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TCCCTGAGACCCTAACTCGTGA ACGGGTCAGGAGCTTGGGAGAC up 4 0


Secondary structure

TTATGGCTGCTCTCCTCCTGTTCCCTGAGACCCTAACTCGTGAGGTCTTTTTCCAAAATCACGGGTCAGGAGCTTGGGAGACAGGTGGAGGGCTTCAGCA
---------------------TCCCTGAGACCCTAACTCGTG 	171
---------------------TCCCTGAGACCCTAACTCGTGA 	13220
----------------------CCCTGAGACCCTAACTCGTGA 	23
-----------------------CCTGAGACCCTAACTCGTG 	1
-----------------------CCTGAGACCCTAACTCGTGA 	32
--------------------------------------------------------AATCACGGGTCAGGAGCTTGGGA 	1
----------------------------------------------------------TCACGGGTCAGGAGCTTGGGAGAC 	3
-----------------------------------------------------------CACGGGTCAGGAGCTTGGGAGAC 	3
-----------------------------------------------------------CACGGGTCAGGAGCTTGGGAGACA 	1
-----------------------------------------------------------CACGGGTCAGGAGCTTGGGAGA 	2
------------------------------------------------------------ACGGGTCAGGAGCTTGGGA 	1
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGACA 	171
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGA 	208
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAGAC 	4339
------------------------------------------------------------ACGGGTCAGGAGCTTGGGAG 	24
-------------------------------------------------------------CGGGTCAGGAGCTTGGGAGACA 	2
-------------------------------------------------------------CGGGTCAGGAGCTTGGGAGAC 	32
--------------------------------------------------------------GGGTCAGGAGCTTGGGAGAC 	2


Overlaps with: MNEST034282
Overlaps with miRBase pre-miRNAs: dre-mir-125c
HuntMi prediction: true miRNA