miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCCCTGAGACCCTAACTTGTGA

selected species: Mus musculus



46 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
----------GTCCCTGAGACCCTAACTTGTG 	1
-----------TCCCTGAGACCCTAACTTGTGAGGT 	2
-----------TCCCTGAGACCCTAACTTG 	209
-----------TCCCTGAGACCCTAACTTGT 	3909
-----------TCCCTGAGACCCTAACTTGTGAG 	100
-----------TCCCTGAGACCCTAACTTGTGA 	59844
-----------TCCCTGAGACCCTAACTTGTG 	9656
------------CCCTGAGACCCTAACTTGTGAG 	13
------------CCCTGAGACCCTAACTTGTGAGG 	1
------------CCCTGAGACCCTAACTTGTGA 	1577
------------CCCTGAGACCCTAACTTGTG 	154
------------CCCTGAGACCCTAACTTGT 	27
-------------CCTGAGACCCTAACTTGTGAG 	1
-------------CCTGAGACCCTAACTTGTG 	138
-------------CCTGAGACCCTAACTTGTGA 	825
--------------CTGAGACCCTAACTTGTGA 	44
--------------CTGAGACCCTAACTTGTGAGGT 	12
---------------TGAGACCCTAACTTGTGAGGT 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	94
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	118
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	97
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	141
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	114
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	267
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	41
------------------------------------------------TCACAAGTCAGGTTCTTGG 	3
------------------------------------------------TCACAAGTCAGGTTCTTGGGACC 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGGA 	2
-------------------------------------------------CACAAGTCAGGTTCTTGGG 	9
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGGACC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	119
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTAG 	3
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	307
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	358
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTA 	13
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	281
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	4
---------------------------------------------------CAAGTCAGGTTCTTGGGACCTA 	2
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGACCT 	16
----------------------------------------------------AAGTCAGGTTCTTGGGACCT 	6
----------------------------------------------------AAGTCAGGTTCTTGGGACC 	5
-----------------------------------------------------AGTCAGGTTCTTGGGACCT 	4


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527274-2107 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
------------------CAGTCCCTGAGACCCTAACTTGT 	1
--------------------GTCCCTGAGACCCTAACTTGTG 	1
---------------------TCCCTGAGACCCTAACTTGTGAT 	146
---------------------TCCCTGAGACCCTAACTTG 	209
---------------------TCCCTGAGACCCTAACTTGTGATG 	1
---------------------TCCCTGAGACCCTAACTTGT 	3909
---------------------TCCCTGAGACCCTAACTTGTGA 	59844
---------------------TCCCTGAGACCCTAACTTGTG 	9656
----------------------CCCTGAGACCCTAACTTGTGATG 	1
----------------------CCCTGAGACCCTAACTTGTGA 	1577
----------------------CCCTGAGACCCTAACTTGTGAT 	19
----------------------CCCTGAGACCCTAACTTGTG 	154
----------------------CCCTGAGACCCTAACTTGT 	27
-----------------------CCTGAGACCCTAACTTGTG 	138
-----------------------CCTGAGACCCTAACTTGTGAT 	2
-----------------------CCTGAGACCCTAACTTGTGA 	825
------------------------CTGAGACCCTAACTTGTGA 	44
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAG 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGG 	2
----------------------------------------------------------TCCACGGGTTAGGCTCTTGG 	8
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGA 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	4
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	4
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	10
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	42
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	69
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	7
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGC 	1
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGCT 	7
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAG 	1
---------------------------------------------------------------GGGTTAGGCTCTTGGGAGC 	6
---------------------------------------------------------------GGGTTAGGCTCTTGGGAGCT 	2
----------------------------------------------------------------GGTTAGGCTCTTGGGAGCT 	5


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527280 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
---------AGTCCCTGAGACCCTAACTTGTG 	1
----------GTCCCTGAGACCCTAACTTGTGA 	1
-----------TCCCTGAGACCCTAACTTGTGAGGT 	1
-----------TCCCTGAGACCCTAACTTGT 	3968
-----------TCCCTGAGACCCTAACTTG 	182
-----------TCCCTGAGACCCTAACTTGTG 	5649
-----------TCCCTGAGACCCTAACTTGTGAG 	51
-----------TCCCTGAGACCCTAACTTGTGA 	28068
------------CCCTGAGACCCTAACTTGTG 	67
------------CCCTGAGACCCTAACTTGTGAGG 	1
------------CCCTGAGACCCTAACTTGTGAG 	5
------------CCCTGAGACCCTAACTTGTGA 	567
------------CCCTGAGACCCTAACTTGT 	21
-------------CCTGAGACCCTAACTTGTG 	109
-------------CCTGAGACCCTAACTTGTGA 	448
--------------CTGAGACCCTAACTTGTGAGG 	1
--------------CTGAGACCCTAACTTGTGAGGT 	4
--------------CTGAGACCCTAACTTGTGA 	13
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	26
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	25
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	22
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	41
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	79
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	9
------------------------------------------------TCACAAGTCAGGTTCTTGG 	3
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	49
-------------------------------------------------CACAAGTCAGGTTCTTGGG 	6
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTA 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	81
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	25
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	89
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	67
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGACCT 	4
----------------------------------------------------AAGTCAGGTTCTTGGGACCT 	2


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527280 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
-------------------AGTCCCTGAGACCCTAACTTGTG 	1
--------------------GTCCCTGAGACCCTAACTTGTGA 	1
---------------------TCCCTGAGACCCTAACTTGT 	3968
---------------------TCCCTGAGACCCTAACTTGTGAT 	98
---------------------TCCCTGAGACCCTAACTTG 	182
---------------------TCCCTGAGACCCTAACTTGTG 	5649
---------------------TCCCTGAGACCCTAACTTGTGA 	28068
----------------------CCCTGAGACCCTAACTTGTG 	67
----------------------CCCTGAGACCCTAACTTGTGA 	567
----------------------CCCTGAGACCCTAACTTGT 	21
----------------------CCCTGAGACCCTAACTTGTGAT 	1
-----------------------CCTGAGACCCTAACTTGTG 	109
-----------------------CCTGAGACCCTAACTTGTGAT 	1
-----------------------CCTGAGACCCTAACTTGTGA 	448
------------------------CTGAGACCCTAACTTGTGA 	13
--------------------------------------------------------AATCCACGGGTTAGGCTCTTGG 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGA 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGG 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	21
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	41
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	9
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	6
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGCT 	2
---------------------------------------------------------------GGGTTAGGCTCTTGGGAGCT 	2
----------------------------------------------------------------GGTTAGGCTCTTGGGAGCT 	5


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539868 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
-----------TCCCTGAGACCCTAACTTGTGAG 	2
-----------TCCCTGAGACCCTAACTTGTGA 	568
-----------TCCCTGAGACCCTAACTTGTG 	59
-----------TCCCTGAGACCCTAACTTGT 	71
-----------TCCCTGAGACCCTAACTTG 	3
------------CCCTGAGACCCTAACTTGTGA 	27
------------CCCTGAGACCCTAACTTGTG 	1
------------CCCTGAGACCCTAACTTGT 	2
--------------CTGAGACCCTAACTTGTGA 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	1
------------------------------------------------TCACAAGTCAGGTTCTTGG 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539868 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	35
---------------------TCCCTGAGACCCTAACTTGTGA 	568
---------------------TCCCTGAGACCCTAACTTGTG 	59
---------------------TCCCTGAGACCCTAACTTGT 	71
---------------------TCCCTGAGACCCTAACTTG 	3
----------------------CCCTGAGACCCTAACTTGTGA 	27
----------------------CCCTGAGACCCTAACTTGTG 	1
----------------------CCCTGAGACCCTAACTTGT 	2
------------------------CTGAGACCCTAACTTGTGA 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	3


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539877-5198 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	1
-----------TCCCTGAGACCCTAACTTGTGA 	193
-----------TCCCTGAGACCCTAACTTGTG 	31
-----------TCCCTGAGACCCTAACTTGT 	63
-----------TCCCTGAGACCCTAACTTG 	5
------------CCCTGAGACCCTAACTTGTGA 	19
------------CCCTGAGACCCTAACTTGTG 	1
------------CCCTGAGACCCTAACTTGT 	6
-------------CCTGAGACCCTAACTTGTGA 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	6


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539877-5198 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	10
---------------------TCCCTGAGACCCTAACTTGTGA 	193
---------------------TCCCTGAGACCCTAACTTGTG 	31
---------------------TCCCTGAGACCCTAACTTGT 	63
---------------------TCCCTGAGACCCTAACTTG 	5
---------------------TCCCTGAGACCCTAACTTGTGATG 	1
----------------------CCCTGAGACCCTAACTTGTGA 	19
----------------------CCCTGAGACCCTAACTTGTG 	1
----------------------CCCTGAGACCCTAACTTGT 	6
-----------------------CCTGAGACCCTAACTTGTGA 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	7


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539850 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	175
-----------TCCCTGAGACCCTAACTTGTG 	48
-----------TCCCTGAGACCCTAACTTGT 	17
-----------TCCCTGAGACCCTAACTTG 	3
------------CCCTGAGACCCTAACTTGTGA 	2
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539850 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	7
---------------------TCCCTGAGACCCTAACTTGTGA 	175
---------------------TCCCTGAGACCCTAACTTGTG 	48
---------------------TCCCTGAGACCCTAACTTGT 	17
---------------------TCCCTGAGACCCTAACTTG 	3
----------------------CCCTGAGACCCTAACTTGTGA 	2


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM539835 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	137
-----------TCCCTGAGACCCTAACTTGTG 	18
-----------TCCCTGAGACCCTAACTTG 	2
-----------TCCCTGAGACCCTAACTTGT 	5
-----------TCCCTGAGACCCTAACTTGTGAG 	1
------------CCCTGAGACCCTAACTTGTGA 	3
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539835 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	137
---------------------TCCCTGAGACCCTAACTTGTG 	18
---------------------TCCCTGAGACCCTAACTTG 	2
---------------------TCCCTGAGACCCTAACTTGTGAT 	9
---------------------TCCCTGAGACCCTAACTTGT 	5
----------------------CCCTGAGACCCTAACTTGTGA 	3
----------------------CCCTGAGACCCTAACTTGTGAT 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Mus musculus GSM527276 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
--------TAGTCCCTGAGACCCTAACTTGTG 	1
-----------TCCCTGAGACCCTAACTTGT 	4276
-----------TCCCTGAGACCCTAACTTG 	221
-----------TCCCTGAGACCCTAACTTGTG 	9969
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
-----------TCCCTGAGACCCTAACTTGTGA 	69626
-----------TCCCTGAGACCCTAACTTGTGAG 	108
------------CCCTGAGACCCTAACTTGTG 	170
------------CCCTGAGACCCTAACTTGTGAGG 	2
------------CCCTGAGACCCTAACTTGTGAG 	19
------------CCCTGAGACCCTAACTTGTGA 	1684
------------CCCTGAGACCCTAACTTGT 	37
-------------CCTGAGACCCTAACTTGTGAG 	2
-------------CCTGAGACCCTAACTTGTG 	148
-------------CCTGAGACCCTAACTTGTGAGG 	1
-------------CCTGAGACCCTAACTTGTGA 	979
--------------CTGAGACCCTAACTTGTGAGG 	1
--------------CTGAGACCCTAACTTGTGAGGT 	14
--------------CTGAGACCCTAACTTGTGA 	18
---------------TGAGACCCTAACTTGTGAGG 	1
---------------TGAGACCCTAACTTGTGAGGT 	2
----------------GAGACCCTAACTTGTGAGGT 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	151
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	90
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	123
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	141
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	2
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	265
------------------------------------------------TCACAAGTCAGGTTCTTGGGACC 	8
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	42
------------------------------------------------TCACAAGTCAGGTTCTTGG 	3
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	124
-------------------------------------------------CACAAGTCAGGTTCTTGGGACC 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGGA 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGG 	11
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	10
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTA 	19
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	81
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	347
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	341
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	257
---------------------------------------------------CAAGTCAGGTTCTTGGGACCTA 	2
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	3
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	2
---------------------------------------------------CAAGTCAGGTTCTTGGGACCT 	11
----------------------------------------------------AAGTCAGGTTCTTGGGACCT 	6
----------------------------------------------------AAGTCAGGTTCTTGGGACCTAG 	1
----------------------------------------------------AAGTCAGGTTCTTGGGACC 	5
-----------------------------------------------------AGTCAGGTTCTTGGGACCT 	4


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Mus musculus GSM527276 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---GTGTTGCGCTCCCCTCAGTC 	1
---------------------TCCCTGAGACCCTAACTTGT 	4276
---------------------TCCCTGAGACCCTAACTTGTGATG 	3
---------------------TCCCTGAGACCCTAACTTGTGAT 	155
---------------------TCCCTGAGACCCTAACTTG 	221
---------------------TCCCTGAGACCCTAACTTGTG 	9969
---------------------TCCCTGAGACCCTAACTTGTGA 	69626
----------------------CCCTGAGACCCTAACTTGTG 	170
----------------------CCCTGAGACCCTAACTTGTGA 	1684
----------------------CCCTGAGACCCTAACTTGT 	37
----------------------CCCTGAGACCCTAACTTGTGAT 	9
-----------------------CCTGAGACCCTAACTTGTG 	148
-----------------------CCTGAGACCCTAACTTGTGAT 	7
-----------------------CCTGAGACCCTAACTTGTGA 	979
------------------------CTGAGACCCTAACTTGTGA 	18
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGG 	2
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGA 	6
----------------------------------------------------------TCCACGGGTTAGGCTCTTGG 	5
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	49
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	84
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	9
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	6
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAG 	2
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGC 	2
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGCT 	4
---------------------------------------------------------------GGGTTAGGCTCTTGGGAGC 	6
---------------------------------------------------------------GGGTTAGGCTCTTGGGAGCT 	1
----------------------------------------------------------------GGTTAGGCTCTTGGGAGCT 	12


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Mus musculus GSM539869 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	8356
-----------TCCCTGAGACCCTAACTTGTG 	705
-----------TCCCTGAGACCCTAACTTGT 	1520
-----------TCCCTGAGACCCTAACTTG 	39
-----------TCCCTGAGACCCTAACTTGTGAG 	42
------------CCCTGAGACCCTAACTTGTGAG 	3
------------CCCTGAGACCCTAACTTGTGA 	161
------------CCCTGAGACCCTAACTTGT 	27
-------------CCTGAGACCCTAACTTGTGA 	4
-------------CCTGAGACCCTAACTTGTG 	1
--------------CTGAGACCCTAACTTGTGAG 	1
--------------CTGAGACCCTAACTTGTGA 	4
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	3
------------------------------------------------TCACAAGTCAGGTTCTTGGGACC 	1
------------------------------------------------TCACAAGTCAGGTTCTTGG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	6
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	2
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTA 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	4
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	4
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	5
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	48
---------------------------------------------------CAAGTCAGGTTCTTGGGACCT 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Mus musculus GSM539869 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	8356
---------------------TCCCTGAGACCCTAACTTGTG 	705
---------------------TCCCTGAGACCCTAACTTGT 	1520
---------------------TCCCTGAGACCCTAACTTG 	39
---------------------TCCCTGAGACCCTAACTTGTGATGT 	1
---------------------TCCCTGAGACCCTAACTTGTGATG 	3
---------------------TCCCTGAGACCCTAACTTGTGAT 	292
----------------------CCCTGAGACCCTAACTTGTGA 	161
----------------------CCCTGAGACCCTAACTTGTGAT 	12
----------------------CCCTGAGACCCTAACTTGT 	27
-----------------------CCTGAGACCCTAACTTGTGAT 	2
-----------------------CCTGAGACCCTAACTTGTGA 	4
-----------------------CCTGAGACCCTAACTTGTG 	1
------------------------CTGAGACCCTAACTTGTGAT 	4
------------------------CTGAGACCCTAACTTGTGA 	4
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	27
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	9
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	19
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	163
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	18
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGCT 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Mus musculus GSM539870 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
-----------TCCCTGAGACCCTAACTTGTGAG 	10
-----------TCCCTGAGACCCTAACTTGTGA 	1457
-----------TCCCTGAGACCCTAACTTGTG 	105
-----------TCCCTGAGACCCTAACTTGT 	257
-----------TCCCTGAGACCCTAACTTG 	6
------------CCCTGAGACCCTAACTTGTGAG 	1
------------CCCTGAGACCCTAACTTGTGA 	40
------------CCCTGAGACCCTAACTTGT 	6
-------------CCTGAGACCCTAACTTGTGA 	3
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	2
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	6


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Mus musculus GSM539870 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	52
---------------------TCCCTGAGACCCTAACTTGTGA 	1457
---------------------TCCCTGAGACCCTAACTTGTG 	105
---------------------TCCCTGAGACCCTAACTTGT 	257
---------------------TCCCTGAGACCCTAACTTG 	6
----------------------CCCTGAGACCCTAACTTGTGAT 	2
----------------------CCCTGAGACCCTAACTTGTGA 	40
----------------------CCCTGAGACCCTAACTTGT 	6
-----------------------CCTGAGACCCTAACTTGTGAT 	2
-----------------------CCTGAGACCCTAACTTGTGA 	3
------------------------CTGAGACCCTAACTTGTGAT 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	5
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	5
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	31
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	6


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Mus musculus GSM539849 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	1
-----------TCCCTGAGACCCTAACTTGTGA 	35
-----------TCCCTGAGACCCTAACTTGTG 	12
------------CCCTGAGACCCTAACTTGTGA 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Mus musculus GSM539849 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	2
---------------------TCCCTGAGACCCTAACTTGTGA 	35
---------------------TCCCTGAGACCCTAACTTGTG 	12
----------------------CCCTGAGACCCTAACTTGTGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Mus musculus GSM527277-2110 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
---------AGTCCCTGAGACCCTAACTTGTG 	1
---------AGTCCCTGAGACCCTAACTTGTGA 	2
----------GTCCCTGAGACCCTAACTTGTGA 	5
----------GTCCCTGAGACCCTAACTTGT 	1
-----------TCCCTGAGACCCTAACTTG 	470
-----------TCCCTGAGACCCTAACTTGT 	9170
-----------TCCCTGAGACCCTAACTTGTGA 	110833
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
-----------TCCCTGAGACCCTAACTTGTGAGGT 	1
-----------TCCCTGAGACCCTAACTTGTG 	17076
-----------TCCCTGAGACCCTAACTTGTGAG 	194
------------CCCTGAGACCCTAACTTGTGAG 	37
------------CCCTGAGACCCTAACTTGTGA 	2838
------------CCCTGAGACCCTAACTTGT 	66
------------CCCTGAGACCCTAACTTGTGAGG 	5
------------CCCTGAGACCCTAACTTGTG 	300
-------------CCTGAGACCCTAACTTGTGA 	857
-------------CCTGAGACCCTAACTTGTGAG 	1
-------------CCTGAGACCCTAACTTGTG 	121
--------------CTGAGACCCTAACTTGTGA 	44
--------------CTGAGACCCTAACTTGTGAGGT 	17
---------------TGAGACCCTAACTTGTGAGGT 	2
---------------TGAGACCCTAACTTGTGAGGTAT 	2
-----------------AGACCCTAACTTGTGAGGT 	1
--------------------------------------------AACATCACAAGTCAGGTTCTTGG 	2
---------------------------------------------ACATCACAAGTCAGGTTCTTGG 	1
----------------------------------------------CATCACAAGTCAGGTTCTTGG 	1
----------------------------------------------CATCACAAGTCAGGTTCTTGGG 	1
----------------------------------------------CATCACAAGTCAGGTTCTTGGGAC 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	4
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	239
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	176
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	268
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	341
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	282
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	58
------------------------------------------------TCACAAGTCAGGTTCTTGGGACC 	9
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	403
------------------------------------------------TCACAAGTCAGGTTCTTGG 	8
-------------------------------------------------CACAAGTCAGGTTCTTGGGA 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGG 	41
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	20
-------------------------------------------------CACAAGTCAGGTTCTTGGGACC 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGGACCT 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTAG 	6
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTA 	24
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	483
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	224
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	409
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	435
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	11
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	9
---------------------------------------------------CAAGTCAGGTTCTTGGGACCTA 	5
---------------------------------------------------CAAGTCAGGTTCTTGGGACCT 	24
----------------------------------------------------AAGTCAGGTTCTTGGGACCT 	12
----------------------------------------------------AAGTCAGGTTCTTGGGACC 	7
----------------------------------------------------AAGTCAGGTTCTTGGGACCTA 	1
-----------------------------------------------------AGTCAGGTTCTTGGGACCT 	4


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Mus musculus GSM539848 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	116
-----------TCCCTGAGACCCTAACTTGTG 	10
-----------TCCCTGAGACCCTAACTTGT 	14
-----------TCCCTGAGACCCTAACTTG 	2
------------CCCTGAGACCCTAACTTGTGA 	5
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Mus musculus GSM539848 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	6
---------------------TCCCTGAGACCCTAACTTGTGA 	116
---------------------TCCCTGAGACCCTAACTTGTG 	10
---------------------TCCCTGAGACCCTAACTTGT 	14
---------------------TCCCTGAGACCCTAACTTG 	2
----------------------CCCTGAGACCCTAACTTGTGA 	5
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Mus musculus GSM539864 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTG 	7
-----------TCCCTGAGACCCTAACTTGTGA 	32
-----------TCCCTGAGACCCTAACTTGT 	5
-----------TCCCTGAGACCCTAACTTG 	2
------------CCCTGAGACCCTAACTTGTGA 	1
------------CCCTGAGACCCTAACTTGT 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Mus musculus GSM539864 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTG 	7
---------------------TCCCTGAGACCCTAACTTGTGA 	32
---------------------TCCCTGAGACCCTAACTTGT 	5
---------------------TCCCTGAGACCCTAACTTG 	2
---------------------TCCCTGAGACCCTAACTTGTGAT 	1
----------------------CCCTGAGACCCTAACTTGTGA 	1
----------------------CCCTGAGACCCTAACTTGT 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Mus musculus GSM539872 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	1634
-----------TCCCTGAGACCCTAACTTGTG 	250
-----------TCCCTGAGACCCTAACTTGT 	342
-----------TCCCTGAGACCCTAACTTG 	21
-----------TCCCTGAGACCCTAACTTGTGAG 	9
------------CCCTGAGACCCTAACTTGTGA 	52
------------CCCTGAGACCCTAACTTGTG 	3
------------CCCTGAGACCCTAACTTGT 	3
-------------CCTGAGACCCTAACTTGTGA 	4
--------------CTGAGACCCTAACTTGTGA 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGG 	2
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	7
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	9
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	2
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Mus musculus GSM539872 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	1634
---------------------TCCCTGAGACCCTAACTTGTG 	250
---------------------TCCCTGAGACCCTAACTTGT 	342
---------------------TCCCTGAGACCCTAACTTG 	21
---------------------TCCCTGAGACCCTAACTTGTGAT 	110
----------------------CCCTGAGACCCTAACTTGTGA 	52
----------------------CCCTGAGACCCTAACTTGTGAT 	4
----------------------CCCTGAGACCCTAACTTGTG 	3
----------------------CCCTGAGACCCTAACTTGT 	3
-----------------------CCTGAGACCCTAACTTGTGA 	4
------------------------CTGAGACCCTAACTTGTGAT 	2
------------------------CTGAGACCCTAACTTGTGA 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	10
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Mus musculus GSM539853 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	79
-----------TCCCTGAGACCCTAACTTGTG 	5
-----------TCCCTGAGACCCTAACTTGT 	29
------------CCCTGAGACCCTAACTTGTGA 	1
------------CCCTGAGACCCTAACTTGT 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Mus musculus GSM539853 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGATG 	1
---------------------TCCCTGAGACCCTAACTTGTGA 	79
---------------------TCCCTGAGACCCTAACTTGTG 	5
---------------------TCCCTGAGACCCTAACTTGT 	29
---------------------TCCCTGAGACCCTAACTTGTGAT 	10
----------------------CCCTGAGACCCTAACTTGTGA 	1
----------------------CCCTGAGACCCTAACTTGT 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	6
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	13


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Mus musculus GSM539871 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	4
-----------TCCCTGAGACCCTAACTTGTGA 	144
-----------TCCCTGAGACCCTAACTTGTG 	12
-----------TCCCTGAGACCCTAACTTGT 	21
------------CCCTGAGACCCTAACTTGTGA 	4
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Mus musculus GSM539871 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	6
---------------------TCCCTGAGACCCTAACTTGTGA 	144
---------------------TCCCTGAGACCCTAACTTGTG 	12
---------------------TCCCTGAGACCCTAACTTGT 	21
----------------------CCCTGAGACCCTAACTTGTGA 	4
------------------------CTGAGACCCTAACTTGTGAT 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	1


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Mus musculus GSM539878 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGA 	2046
-----------TCCCTGAGACCCTAACTTGTG 	352
-----------TCCCTGAGACCCTAACTTGT 	547
-----------TCCCTGAGACCCTAACTTG 	31
-----------TCCCTGAGACCCTAACTTGTGAG 	14
------------CCCTGAGACCCTAACTTGTGA 	83
------------CCCTGAGACCCTAACTTGTG 	5
------------CCCTGAGACCCTAACTTGT 	17
-------------CCTGAGACCCTAACTTGTGA 	6
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGG 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	15
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	9
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Mus musculus GSM539878 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	179
---------------------TCCCTGAGACCCTAACTTGTGA 	2046
---------------------TCCCTGAGACCCTAACTTGTG 	352
---------------------TCCCTGAGACCCTAACTTGT 	547
---------------------TCCCTGAGACCCTAACTTG 	31
---------------------TCCCTGAGACCCTAACTTGTGATG 	4
----------------------CCCTGAGACCCTAACTTGTGAT 	6
----------------------CCCTGAGACCCTAACTTGTGA 	83
----------------------CCCTGAGACCCTAACTTGTG 	5
----------------------CCCTGAGACCCTAACTTGT 	17
-----------------------CCTGAGACCCTAACTTGTGA 	6
------------------------CTGAGACCCTAACTTGTGAT 	4
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	8
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	51
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	9
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	10
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	7


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Mus musculus GSM539873 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	2
-----------TCCCTGAGACCCTAACTTGTGA 	622
-----------TCCCTGAGACCCTAACTTGTG 	85
-----------TCCCTGAGACCCTAACTTGT 	104
-----------TCCCTGAGACCCTAACTTG 	8
------------CCCTGAGACCCTAACTTGTGA 	13
------------CCCTGAGACCCTAACTTGT 	2
-------------CCTGAGACCCTAACTTGTGA 	4
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	3
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	13
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	3
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	2


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Mus musculus GSM539873 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	28
---------------------TCCCTGAGACCCTAACTTGTGA 	622
---------------------TCCCTGAGACCCTAACTTGTG 	85
---------------------TCCCTGAGACCCTAACTTGT 	104
---------------------TCCCTGAGACCCTAACTTG 	8
----------------------CCCTGAGACCCTAACTTGTGAT 	1
----------------------CCCTGAGACCCTAACTTGTGA 	13
----------------------CCCTGAGACCCTAACTTGT 	2
-----------------------CCTGAGACCCTAACTTGTGA 	4
------------------------CTGAGACCCTAACTTGTGAT 	1
-------------------------TGAGACCCTAACTTGTGAT 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	15


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Mus musculus GSM539875 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	8
-----------TCCCTGAGACCCTAACTTGTGA 	438
-----------TCCCTGAGACCCTAACTTGTG 	133
-----------TCCCTGAGACCCTAACTTGT 	114
-----------TCCCTGAGACCCTAACTTG 	21
------------CCCTGAGACCCTAACTTGTGA 	6
------------CCCTGAGACCCTAACTTGT 	2
-------------CCTGAGACCCTAACTTGTGA 	2
--------------CTGAGACCCTAACTTGTGAGGTA 	1
--------------CTGAGACCCTAACTTGTGAGGT 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	1
------------------------------------------------TCACAAGTCAGGTTCTTGG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	5
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Mus musculus GSM539875 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGAT 	17
---------------------TCCCTGAGACCCTAACTTGTGA 	438
---------------------TCCCTGAGACCCTAACTTGTG 	133
---------------------TCCCTGAGACCCTAACTTGT 	114
---------------------TCCCTGAGACCCTAACTTG 	21
----------------------CCCTGAGACCCTAACTTGTGA 	6
----------------------CCCTGAGACCCTAACTTGTGAT 	3
----------------------CCCTGAGACCCTAACTTGT 	2
-----------------------CCTGAGACCCTAACTTGTGA 	2
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	5
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	8


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
38 Mus musculus GSM539867 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	9
-----------TCCCTGAGACCCTAACTTGTGA 	4139
-----------TCCCTGAGACCCTAACTTGTG 	228
-----------TCCCTGAGACCCTAACTTGT 	52
-----------TCCCTGAGACCCTAACTTG 	12
------------CCCTGAGACCCTAACTTGTGA 	24
-------------CCTGAGACCCTAACTTGTGA 	38
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	3
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	2


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
39 Mus musculus GSM539867 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
--CGTGTTGCGCTCCCCTCAG 	1
---------------------TCCCTGAGACCCTAACTTGTGAT 	108
---------------------TCCCTGAGACCCTAACTTGTGA 	4139
---------------------TCCCTGAGACCCTAACTTGTG 	228
---------------------TCCCTGAGACCCTAACTTGT 	52
---------------------TCCCTGAGACCCTAACTTG 	12
----------------------CCCTGAGACCCTAACTTGTGAT 	9
----------------------CCCTGAGACCCTAACTTGTGA 	24
-----------------------CCTGAGACCCTAACTTGTGAT 	4
-----------------------CCTGAGACCCTAACTTGTGA 	38
------------------------CTGAGACCCTAACTTGTGAT 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAG 	24
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGA 	4
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGG 	3
----------------------------------------------------------TCCACGGGTTAGGCTCTTGG 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGCT 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	275
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	23
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	4
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	10
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCTG 	4
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	1571
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	289
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	212
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	19


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
40 Mus musculus GSM539876 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	9
-----------TCCCTGAGACCCTAACTTGTGA 	2639
-----------TCCCTGAGACCCTAACTTGT 	396
-----------TCCCTGAGACCCTAACTTG 	112
-----------TCCCTGAGACCCTAACTTGTG 	595
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
------------CCCTGAGACCCTAACTTGTGAG 	1
------------CCCTGAGACCCTAACTTGTGA 	45
------------CCCTGAGACCCTAACTTGTG 	5
-------------CCTGAGACCCTAACTTGTG 	1
-------------CCTGAGACCCTAACTTGTGA 	5
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	2
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	3
------------------------------------------------TCACAAGTCAGGTTCTTGG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	1
-------------------------------------------------CACAAGTCAGGTTCTTGGG 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	14
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
41 Mus musculus GSM539876 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	2639
---------------------TCCCTGAGACCCTAACTTGT 	396
---------------------TCCCTGAGACCCTAACTTG 	112
---------------------TCCCTGAGACCCTAACTTGTG 	595
---------------------TCCCTGAGACCCTAACTTGTGAT 	91
----------------------CCCTGAGACCCTAACTTGTGAT 	4
----------------------CCCTGAGACCCTAACTTGTGA 	45
----------------------CCCTGAGACCCTAACTTGTG 	5
-----------------------CCTGAGACCCTAACTTGTG 	1
-----------------------CCTGAGACCCTAACTTGTGA 	5
------------------------CTGAGACCCTAACTTGTGAT 	3
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAG 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	4
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	20
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	2


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
42 Mus musculus GSM539854 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
----------GTCCCTGAGACCCTAACTTGTGA 	1
-----------TCCCTGAGACCCTAACTTGTGAG 	12
-----------TCCCTGAGACCCTAACTTGTGA 	5175
-----------TCCCTGAGACCCTAACTTGTG 	298
-----------TCCCTGAGACCCTAACTTGT 	858
-----------TCCCTGAGACCCTAACTTG 	45
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
------------CCCTGAGACCCTAACTTGTGA 	33
------------CCCTGAGACCCTAACTTGTG 	1
------------CCCTGAGACCCTAACTTGT 	8
-------------CCTGAGACCCTAACTTGTGA 	18
-------------CCTGAGACCCTAACTTGTG 	1
--------------CTGAGACCCTAACTTGTGA 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	2
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	1


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
43 Mus musculus GSM539854 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
--------------------GTCCCTGAGACCCTAACTTGTGA 	1
---------------------TCCCTGAGACCCTAACTTGTGATG 	4
---------------------TCCCTGAGACCCTAACTTGTGAT 	585
---------------------TCCCTGAGACCCTAACTTGTGA 	5175
---------------------TCCCTGAGACCCTAACTTGTG 	298
---------------------TCCCTGAGACCCTAACTTGT 	858
---------------------TCCCTGAGACCCTAACTTG 	45
---------------------TCCCTGAGACCCTAACTTGTGATGT 	1
----------------------CCCTGAGACCCTAACTTGTGAT 	4
----------------------CCCTGAGACCCTAACTTGTGA 	33
----------------------CCCTGAGACCCTAACTTGTG 	1
----------------------CCCTGAGACCCTAACTTGT 	8
-----------------------CCTGAGACCCTAACTTGTGAT 	2
-----------------------CCTGAGACCCTAACTTGTGA 	18
-----------------------CCTGAGACCCTAACTTGTG 	1
------------------------CTGAGACCCTAACTTGTGAT 	3
------------------------CTGAGACCCTAACTTGTGA 	2
--------------------------------------------------------AATCCACGGGTTAGGCTCTTGGGAG 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAGC 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGA 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTG 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAG 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTGG 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	11
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	56
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	6
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	106
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	55
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	294
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	46


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
44 Mus musculus GSM527279-2112 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
---------AGTCCCTGAGACCCTAACTTGTGA 	1
---------AGTCCCTGAGACCCTAACTTGT 	1
----------GTCCCTGAGACCCTAACTTGTGA 	1
-----------TCCCTGAGACCCTAACTTGTGAGGT 	1
-----------TCCCTGAGACCCTAACTTG 	324
-----------TCCCTGAGACCCTAACTTGT 	9097
-----------TCCCTGAGACCCTAACTTGTG 	16802
-----------TCCCTGAGACCCTAACTTGTGAG 	134
-----------TCCCTGAGACCCTAACTTGTGA 	82255
-----------TCCCTGAGACCCTAACTTGTGAGG 	1
------------CCCTGAGACCCTAACTTGTGAG 	9
------------CCCTGAGACCCTAACTTGTGA 	1460
------------CCCTGAGACCCTAACTTGTG 	163
------------CCCTGAGACCCTAACTTGT 	56
-------------CCTGAGACCCTAACTTGTGAG 	2
-------------CCTGAGACCCTAACTTGTG 	180
-------------CCTGAGACCCTAACTTGTGAGGT 	1
-------------CCTGAGACCCTAACTTGTGA 	971
--------------CTGAGACCCTAACTTGTGA 	22
--------------CTGAGACCCTAACTTGTGAGG 	1
--------------CTGAGACCCTAACTTGTGAGGT 	10
--------------------------------AGGTATTTTAGTAACATCA 	1
----------------------------------------------CATCACAAGTCAGGTTCTTGGGA 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	90
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	159
-----------------------------------------------ATCACAAGTCAGGTTCTTGGG 	70
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	94
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	100
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	235
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	21
------------------------------------------------TCACAAGTCAGGTTCTTGG 	3
------------------------------------------------TCACAAGTCAGGTTCTTGGGACC 	6
-------------------------------------------------CACAAGTCAGGTTCTTGGGA 	2
-------------------------------------------------CACAAGTCAGGTTCTTGGG 	3
-------------------------------------------------CACAAGTCAGGTTCTTGGGAC 	10
-------------------------------------------------CACAAGTCAGGTTCTTGGGACC 	1
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	108
--------------------------------------------------ACAAGTCAGGTTCTTGGGACC 	300
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	337
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCTA 	16
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	255
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	5
---------------------------------------------------CAAGTCAGGTTCTTGGGACCTA 	2
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGACCT 	21
----------------------------------------------------AAGTCAGGTTCTTGGGACCT 	10
----------------------------------------------------AAGTCAGGTTCTTGGGACC 	4
-----------------------------------------------------AGTCAGGTTCTTGGGACCT 	6


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
45 Mus musculus GSM539874 TCCCTGAGACCCTAACTTGTGA ACAAGTCAGGTTCTTGGGACC up 2 1


Secondary structure

ACTTTGCCTAGTCCCTGAGACCCTAACTTGTGAGGTATTTTAGTAACATCACAAGTCAGGTTCTTGGGACCTAGGCGGA
-----------TCCCTGAGACCCTAACTTGTGAG 	26
-----------TCCCTGAGACCCTAACTTGTGA 	4931
-----------TCCCTGAGACCCTAACTTGTG 	1145
-----------TCCCTGAGACCCTAACTTGT 	677
-----------TCCCTGAGACCCTAACTTG 	149
------------CCCTGAGACCCTAACTTGTGAG 	2
------------CCCTGAGACCCTAACTTGTGA 	74
------------CCCTGAGACCCTAACTTGT 	2
------------CCCTGAGACCCTAACTTGTG 	14
-------------CCTGAGACCCTAACTTGTGA 	12
-------------CCTGAGACCCTAACTTGTG 	1
--------------CTGAGACCCTAACTTGTGA 	2
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGAC 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGGGA 	1
-----------------------------------------------ATCACAAGTCAGGTTCTTGG 	6
-----------------------------------------------ATCACAAGTCAGGTTCTTG 	1
------------------------------------------------TCACAAGTCAGGTTCTTGGGA 	15
------------------------------------------------TCACAAGTCAGGTTCTTGG 	3
------------------------------------------------TCACAAGTCAGGTTCTTGGGAC 	4
------------------------------------------------TCACAAGTCAGGTTCTTGGG 	10
--------------------------------------------------ACAAGTCAGGTTCTTGGGA 	50
--------------------------------------------------ACAAGTCAGGTTCTTGGGAC 	15
--------------------------------------------------ACAAGTCAGGTTCTTGGGACCT 	3
---------------------------------------------------CAAGTCAGGTTCTTGGGACC 	1
---------------------------------------------------CAAGTCAGGTTCTTGGGAC 	2


Overlaps with: MNEST031845 MNEST031846
Overlaps with miRBase pre-miRNAs: mmu-mir-125b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
46 Mus musculus GSM539874 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

ATCGTGTTGCGCTCCCCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGGGTCGTGCCTTTGCA
---------------------TCCCTGAGACCCTAACTTGTGATG 	7
---------------------TCCCTGAGACCCTAACTTGTGAT 	213
---------------------TCCCTGAGACCCTAACTTGTGA 	4931
---------------------TCCCTGAGACCCTAACTTGTG 	1145
---------------------TCCCTGAGACCCTAACTTGT 	677
---------------------TCCCTGAGACCCTAACTTG 	149
---------------------TCCCTGAGACCCTAACTTGTGATGT 	1
----------------------CCCTGAGACCCTAACTTGTGA 	74
----------------------CCCTGAGACCCTAACTTGT 	2
----------------------CCCTGAGACCCTAACTTGTGAT 	4
----------------------CCCTGAGACCCTAACTTGTG 	14
-----------------------CCTGAGACCCTAACTTGTGAT 	3
-----------------------CCTGAGACCCTAACTTGTGA 	12
-----------------------CCTGAGACCCTAACTTGTG 	1
------------------------CTGAGACCCTAACTTGTGAT 	3
------------------------CTGAGACCCTAACTTGTGA 	2
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAG 	1
----------------------------------------------------------TCCACGGGTTAGGCTCTTG 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	12
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	4
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	37
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	20
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	3


Overlaps with: MNEST031843 MNEST031844
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 mmu-mir-125b-1
HuntMi prediction: true miRNA