miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCCCTGAGACCCTAACTTGTGA

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

AATTTACTGCGCTCCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTGCCCCTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	3045
---------------------TCCCTGAGACCCTAACTTGTG 	849
---------------------TCCCTGAGACCCTAACTTGT 	121
---------------------TCCCTGAGACCCTAACTTG 	60
---------------------TCCCTGAGACCCTAACTTGTGAT 	1
-----------------------CCTGAGACCCTAACTTGTG 	7
-----------------------CCTGAGACCCTAACTTGTGA 	23
------------------------CTGAGACCCTAACTTGTGA 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	9
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	56
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGC 	1
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGCT 	1


Overlaps with: MNEST033971
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 ssc-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

AATTTACTGCGCTCCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTGCCCCTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	3052
---------------------TCCCTGAGACCCTAACTTGTG 	839
---------------------TCCCTGAGACCCTAACTTGT 	78
---------------------TCCCTGAGACCCTAACTTG 	42
---------------------TCCCTGAGACCCTAACTTGTGAT 	2
----------------------CCCTGAGACCCTAACTTGT 	1
-----------------------CCTGAGACCCTAACTTGTG 	10
-----------------------CCTGAGACCCTAACTTGTGA 	22
------------------------CTGAGACCCTAACTTGTGA 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGG 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	2
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	10
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	6
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	49
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	4


Overlaps with: MNEST033971
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 ssc-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

AATTTACTGCGCTCCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTGCCCCTGCA
---------------------TCCCTGAGACCCTAACTTGT 	81
---------------------TCCCTGAGACCCTAACTTG 	28
---------------------TCCCTGAGACCCTAACTTGTGAT 	4
---------------------TCCCTGAGACCCTAACTTGTGA 	1432
---------------------TCCCTGAGACCCTAACTTGTG 	509
----------------------CCCTGAGACCCTAACTTGTGA 	2
-----------------------CCTGAGACCCTAACTTGTG 	7
-----------------------CCTGAGACCCTAACTTGTGA 	19
------------------------CTGAGACCCTAACTTGTGA 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	19
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	10
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	7
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	1


Overlaps with: MNEST033971
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 ssc-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

AATTTACTGCGCTCCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTGCCCCTGCA
---------------------TCCCTGAGACCCTAACTTGTGA 	7048
---------------------TCCCTGAGACCCTAACTTGTGAT 	7
---------------------TCCCTGAGACCCTAACTTGT 	262
---------------------TCCCTGAGACCCTAACTTGTG 	2022
---------------------TCCCTGAGACCCTAACTTG 	73
---------------------TCCCTGAGACCCTAACTTGTGATG 	1
----------------------CCCTGAGACCCTAACTTGTGA 	4
----------------------CCCTGAGACCCTAACTTGTG 	2
-----------------------CCTGAGACCCTAACTTGTG 	46
-----------------------CCTGAGACCCTAACTTGTGA 	111
------------------------CTGAGACCCTAACTTGTGA 	7
----------------------------------------------------------TCCACGGGTTAGGCTCTTGGGAG 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAGC 	3
------------------------------------------------------------CACGGGTTAGGCTCTTGGGA 	2
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	3
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	9
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	61
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	41
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	266
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGCT 	3
--------------------------------------------------------------CGGGTTAGGCTCTTGGGAGC 	3


Overlaps with: MNEST033971
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 ssc-mir-125b-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TCCCTGAGACCCTAACTTGTGA ACGGGTTAGGCTCTTGGGAGCT up 3 0


Secondary structure

AATTTACTGCGCTCCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTGCCCCTGCA
---------------------TCCCTGAGACCCTAACTTGT 	40
---------------------TCCCTGAGACCCTAACTTG 	22
---------------------TCCCTGAGACCCTAACTTGTGA 	1011
---------------------TCCCTGAGACCCTAACTTGTG 	393
----------------------CCCTGAGACCCTAACTTGTGA 	1
-----------------------CCTGAGACCCTAACTTGTG 	8
-----------------------CCTGAGACCCTAACTTGTGA 	11
------------------------CTGAGACCCTAACTTGTGA 	1
------------------------------------------------------------CACGGGTTAGGCTCTTGGGAG 	1
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGC 	11
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAG 	5
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGAGCT 	4
-------------------------------------------------------------ACGGGTTAGGCTCTTGGGA 	1


Overlaps with: MNEST033971
Overlaps with miRBase pre-miRNAs: cfa-mir-125b-1 ssc-mir-125b-1
HuntMi prediction: true miRNA