miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCCCTGAGACCCTTAACCTGTG

selected species: Danio rerio



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TCCCTGAGACCCTTAACCTGTG CAGGTGAGGTCCTCAGGAACA up 3 3


Secondary structure

TTTACACAGTATGTCTCTTTGTCCCTGAGACCCTTAACCTGTGAGGTCAAACTAGGTCACAGGTGAGGTCCTCAGGAACAGGGCTGCATGCGTCGTCA
---------------------TCCCTGAGACCCTTAACCTGTGA 	116
---------------------TCCCTGAGACCCTTAACCTGTG 	627
---------------------TCCCTGAGACCCTTAACCTGT 	21
---------------------TCCCTGAGACCCTTAACCTG 	2
----------------------CCCTGAGACCCTTAACCTGTG 	2
-----------------------CCTGAGACCCTTAACCTGTG 	1
--------------------------------------------------------TCACAGGTGAGGTCCTCAGGAA 	1
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAACA 	84
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAAC 	37
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAACAG 	3
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAACA 	106
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAAC 	23
------------------------------------------------------------AGGTGAGGTCCTCAGGAAC 	1
------------------------------------------------------------AGGTGAGGTCCTCAGGAACA 	1


Overlaps with: MNEST034277
Overlaps with miRBase pre-miRNAs: dre-mir-125a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TCCCTGAGACCCTTAACCTGTG CAGGTGAGGTCCTTGGGAACA up 3 3


Secondary structure

CCAAATCGATGTATGTCTGTGTCCCTGAGACCCTTAACCTGTGATGTCTTCCAAGGTCACAGGTGAGGTCCTTGGGAACACGGCTGTATATGATGACG
---------------------TCCCTGAGACCCTTAACCTGTGA 	116
---------------------TCCCTGAGACCCTTAACCTGTG 	627
---------------------TCCCTGAGACCCTTAACCTGT 	21
---------------------TCCCTGAGACCCTTAACCTG 	2
----------------------CCCTGAGACCCTTAACCTGTG 	2
-----------------------CCTGAGACCCTTAACCTGTG 	1
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAACA 	14
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAA 	1
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAAC 	11
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAACA 	21
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAAC 	9
------------------------------------------------------------AGGTGAGGTCCTTGGGAACA 	1


Overlaps with: MNEST034278
Overlaps with miRBase pre-miRNAs: dre-mir-125a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 TCCCTGAGACCCTTAACCTGTG CAGGTGAGGTCCTCAGGAACA up 3 3


Secondary structure

TTTACACAGTATGTCTCTTTGTCCCTGAGACCCTTAACCTGTGAGGTCAAACTAGGTCACAGGTGAGGTCCTCAGGAACAGGGCTGCATGCGTCGTCA
---------------------TCCCTGAGACCCTTAACCTGTGA 	133
---------------------TCCCTGAGACCCTTAACCTGTG 	468
---------------------TCCCTGAGACCCTTAACCTGT 	6
-----------------------CCTGAGACCCTTAACCTGTG 	1
------------------------CTGAGACCCTTAACCTGTG 	1
-------------------------TGAGACCCTTAACCTGTGA 	1
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAACA 	4
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAAC 	3
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAA 	3
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAACAG 	2
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAACA 	5
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAAC 	3


Overlaps with: MNEST034277
Overlaps with miRBase pre-miRNAs: dre-mir-125a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TCCCTGAGACCCTTAACCTGTG CAGGTGAGGTCCTTGGGAACA up 3 3


Secondary structure

CCAAATCGATGTATGTCTGTGTCCCTGAGACCCTTAACCTGTGATGTCTTCCAAGGTCACAGGTGAGGTCCTTGGGAACACGGCTGTATATGATGACG
---------------------TCCCTGAGACCCTTAACCTGTGAT 	1
---------------------TCCCTGAGACCCTTAACCTGTGA 	133
---------------------TCCCTGAGACCCTTAACCTGTG 	468
---------------------TCCCTGAGACCCTTAACCTGT 	6
-----------------------CCTGAGACCCTTAACCTGTG 	1
------------------------CTGAGACCCTTAACCTGTG 	1
-------------------------TGAGACCCTTAACCTGTGA 	1
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAACA 	7
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAA 	2
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAAC 	3
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAAC 	3
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAACA 	9


Overlaps with: MNEST034278
Overlaps with miRBase pre-miRNAs: dre-mir-125a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TCCCTGAGACCCTTAACCTGTG CAGGTGAGGTCCTCAGGAACA up 3 3


Secondary structure

TTTACACAGTATGTCTCTTTGTCCCTGAGACCCTTAACCTGTGAGGTCAAACTAGGTCACAGGTGAGGTCCTCAGGAACAGGGCTGCATGCGTCGTCA
---------------------TCCCTGAGACCCTTAACCTGTGA 	1237
---------------------TCCCTGAGACCCTTAACCTGTG 	3261
---------------------TCCCTGAGACCCTTAACCTGT 	55
---------------------TCCCTGAGACCCTTAACCT 	1
----------------------CCCTGAGACCCTTAACCTGTGA 	3
-----------------------CCTGAGACCCTTAACCTGTGA 	1
-----------------------CCTGAGACCCTTAACCTGTGAGG 	1
-----------------------CCTGAGACCCTTAACCTGTG 	3
----------------------------------------------------------ACAGGTGAGGTCCTCAGGA 	2
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAACAG 	1
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAAC 	378
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAA 	6
----------------------------------------------------------ACAGGTGAGGTCCTCAGGAACA 	1400
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAACAG 	9
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAA 	1
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAAC 	111
-----------------------------------------------------------CAGGTGAGGTCCTCAGGAACA 	984
------------------------------------------------------------AGGTGAGGTCCTCAGGAACA 	4


Overlaps with: MNEST034277
Overlaps with miRBase pre-miRNAs: dre-mir-125a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540646 TCCCTGAGACCCTTAACCTGTG CAGGTGAGGTCCTTGGGAACA up 3 3


Secondary structure

CCAAATCGATGTATGTCTGTGTCCCTGAGACCCTTAACCTGTGATGTCTTCCAAGGTCACAGGTGAGGTCCTTGGGAACACGGCTGTATATGATGACG
-CAAATCGATGTATGTCTGTG 	4
--AAATCGATGTATGTCTGTG 	4
---------------------TCCCTGAGACCCTTAACCTGTGA 	1237
---------------------TCCCTGAGACCCTTAACCTGTG 	3261
---------------------TCCCTGAGACCCTTAACCTGT 	55
---------------------TCCCTGAGACCCTTAACCT 	1
----------------------CCCTGAGACCCTTAACCTGTGA 	3
-----------------------CCTGAGACCCTTAACCTGTGA 	1
-----------------------CCTGAGACCCTTAACCTGTG 	3
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAACA 	181
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAA 	3
----------------------------------------------------------ACAGGTGAGGTCCTTGGGAAC 	48
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAACA 	198
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAAC 	26
-----------------------------------------------------------CAGGTGAGGTCCTTGGGAA 	1


Overlaps with: MNEST034278
Overlaps with miRBase pre-miRNAs: dre-mir-125a-2
HuntMi prediction: true miRNA