miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCCCTGTCCTCCAGGAGCTC

selected species: Sus scrofa



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TCCCTGTCCTCCAGGAGCTC GCCCTGGAGTGACGGGGGTG down 0 2


Secondary structure

GTGGGGACCCGCCCTGTGCTGAGCCCTGGAGTGACGGGGGTGAAAGGGCAGAGTCCCTGTCCTCCAGGAGCTCCCCATGTGGCGCCCAGAGA
-----------------------------------------------------TCCCTGTCCTCCAGGAGCTC 	17
-----------------------------------------------------TCCCTGTCCTCCAGGAGCT 	1

Overlaps with: MNEST034158 MNEST034159
Overlaps with miRBase pre-miRNAs: ssc-mir-4334
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TCCCTGTCCTCCAGGAGCTC GCCCTGGAGTGACGGGGGTG down 0 2


Secondary structure

GTGGGGACCCGCCCTGTGCTGAGCCCTGGAGTGACGGGGGTGAAAGGGCAGAGTCCCTGTCCTCCAGGAGCTCCCCATGTGGCGCCCAGAGA
-----------------------------------------------------TCCCTGTCCTCCAGGAGCTC 	12

Overlaps with: MNEST034158 MNEST034159
Overlaps with miRBase pre-miRNAs: ssc-mir-4334
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636848 TCCCTGTCCTCCAGGAGCTC GCCCTGGAGTGACGGGGGTG down 0 2


Secondary structure

GTGGGGACCCGCCCTGTGCTGAGCCCTGGAGTGACGGGGGTGAAAGGGCAGAGTCCCTGTCCTCCAGGAGCTCCCCATGTGGCGCCCAGAGA
-----------------------------------------------------TCCCTGTCCTCCAGGAGCT 	2
-----------------------------------------------------TCCCTGTCCTCCAGGAGCTC 	112

Overlaps with: MNEST034158 MNEST034159
Overlaps with miRBase pre-miRNAs: ssc-mir-4334
HuntMi prediction: true miRNA