miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCCGGACCAGGCTTCATTCCC

selected species: Physcomitrella patens

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM115097	TCCGGACCAGGCTTCATTCCC	GAATGACGTATGGCCCGAAGC	down	5	0

Secondary structure

CTGGATGTGCCTTTGCCGTGAGGAATGACGTATGGCCCGAAGCTATCTCTTGGATGGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCGGAGTTGCAAATG
---------------------GGAATGACGTATGGCCCGAAG 	1
----------------------GAATGACGTATGGCCCGAAGC 	2
--------------------------------------------------------------------CTCCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	18
---------------------------------------------------------------------TCCGGACCAGGCTTCATTCC 	8
---------------------------------------------------------------------TCCGGACCAGGCTTCATTC 	2
----------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	8
----------------------------------------------------------------------CCGGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------------CCGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039474 MNEST051378
Overlaps with miRBase pre-miRNAs: ppt-MIR166k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM115097	TCCGGACCAGGCTTCATTCCC	GAATGACGTGTGGCCCGAAGC	down	5	0

Secondary structure

AAGATGTTATATATATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCAGAGTTGCAACAAGTGGGAAAGG
-------------------------------GGAATGACGTGTGGCCCGAA 	1
------------------------------------------------------------------------------CTCCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	18
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTCC 	8
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTC 	2
--------------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	8
--------------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCCT 	1
--------------------------------------------------------------------------------CCGGACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039473 MNEST051377
Overlaps with miRBase pre-miRNAs: ppt-MIR166j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM115097	TCCGGACCAGGCTTCATTCCC	GAATGACGTGTGGCCCGTAGC	down	4	0

Secondary structure

CTGAATGAAACGTTTTCGTGGGGAATGACGTGTGGCCCGTAGCCATGTATCTTGGCATGCCAGAATTATGCTCCGGACCAGGCTTCATTCCCCTCGGCAACGTTGCATGAT
---------------------GGAATGACGTGTGGCCCGTAG 	1
----------------------GAATGACGTGTGGCCCGTAGC 	1
----------------------------------------------------------------------CTCCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	18
-----------------------------------------------------------------------TCCGGACCAGGCTTCATTCC 	8
-----------------------------------------------------------------------TCCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	8
------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCCT 	1
------------------------------------------------------------------------CCGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039475 MNEST051379
Overlaps with miRBase pre-miRNAs: ppt-MIR166l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM313212	TCCGGACCAGGCTTCATTCCC	GAATGACGTATGGCCCGAAGC	down	5	0

Secondary structure

CTGGATGTGCCTTTGCCGTGAGGAATGACGTATGGCCCGAAGCTATCTCTTGGATGGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCGGAGTTGCAAATG
---------------------GGAATGACGTATGGCCCGAAG 	1
---------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	6
----------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039474 MNEST051378
Overlaps with miRBase pre-miRNAs: ppt-MIR166k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Physcomitrella patens	GSM313212	TCCGGACCAGGCTTCATTCCC	GAATGACGTGTGGCCCGAAGC	down	5	0

Secondary structure

AAGATGTTATATATATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCAGAGTTGCAACAAGTGGGAAAGG
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	6
--------------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039473 MNEST051377
Overlaps with miRBase pre-miRNAs: ppt-MIR166j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Physcomitrella patens	GSM313212	TCCGGACCAGGCTTCATTCCC	GAATGACGTGTGGCCCGTAGC	down	4	0

Secondary structure

CTGAATGAAACGTTTTCGTGGGGAATGACGTGTGGCCCGTAGCCATGTATCTTGGCATGCCAGAATTATGCTCCGGACCAGGCTTCATTCCCCTCGGCAACGTTGCATGAT
---------------------GGAATGACGTGTGGCCCGTAG 	3
----------------------GAATGACGTGTGGCCCGTAGC 	1
-----------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	6
------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039475 MNEST051379
Overlaps with miRBase pre-miRNAs: ppt-MIR166l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Physcomitrella patens	GSM313215	TCCGGACCAGGCTTCATTCCC	GAATGACGTATGGCCCGAAGC	down	5	0

Secondary structure

CTGGATGTGCCTTTGCCGTGAGGAATGACGTATGGCCCGAAGCTATCTCTTGGATGGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCGGAGTTGCAAATG
--------------------AGGAATGACGTATGGCCCGAA 	1
---------------------GGAATGACGTATGGCCCGAAG 	5
-----------------------AATGACGTATGGCCCGAAGCT 	1
---------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	19
---------------------------------------------------------------------TCCGGACCAGGCTTCATTCC 	3
---------------------------------------------------------------------TCCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------TCCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	11
------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST039474 MNEST051378
Overlaps with miRBase pre-miRNAs: ppt-MIR166k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Physcomitrella patens	GSM313215	TCCGGACCAGGCTTCATTCCC	GAATGACGTGTGGCCCGAAGC	down	5	0

Secondary structure

AAGATGTTATATATATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCCCCTCGGCAGAGTTGCAACAAGTGGGAAAGG
-------------------------------GGAATGACGTGTGGCCCGAAG 	2
-------------------------------GGAATGACGTGTGGCCCGAA 	1
--------------------------------GAATGACGTGTGGCCCGAAG 	3
---------------------------------AATGACGTGTGGCCCGAAGCC 	2
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTCCC 	19
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTCC 	3
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTC 	2
-------------------------------------------------------------------------------TCCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------CCGGACCAGGCTTCATTCCCC 	11
----------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------CAGGCTTCATTCCCCTCGGCA 	1

Overlaps with: MNEST039473 MNEST051377
Overlaps with miRBase pre-miRNAs: ppt-MIR166j
HuntMi prediction: true miRNA