miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGAACCAGGCTTCATTCCCC

selected species: Oryza sativa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TCGAACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

ATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAG
---------------------------------------------TCTGGGTGGAATGTTGTCTGGTTC 	2
---------------------------------------------------TGGAATGTTGTCTGGTTCAAGG 	1
----------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	41
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------GAACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM686040-31373 TCGAACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

ATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAG
---------------------------------------------TCTGGGTGGAATGTTGTCTGGTTC 	1
---------------------------------------------------TGGAATGTTGTCTGGTTCAAG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------TCTCGAACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	53
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCC 	1

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686039-31370 TCGAACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

ATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAG
---------------------------------------------TCTGGGTGGAATGTTGTCTGGTTC 	1
----------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	9
----------------------------------------------------GGAATGTTGTCTGGTTCAAG 	2
----------------------------------------------------GGAATGTTGTCTGGTTCAA 	1
-----------------------------------------------------GAATGTTGTCTGGTTCAAGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------TCTCGAACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------TCTCGAACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	74
-----------------------------------------------------------------------------------------------------------------------------------------------------CGAACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------GAACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM693279 TCGAACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

ATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAG
------------------------------------------GTTTCTGGGTGGAATGTTGTCTGG 	1
--------------------------------------------TTCTGGGTGGAATGTTGTCTGGTT 	1
----------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	6
-----------------------------------------------------GAATGTTGTCTGGTTCAAGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------TCTCGAACCAGGCTTCATTCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	19
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCC 	1

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520639-18678 TCGAACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

ATGACACAATGCTAGTGATAGAGGGGATTGAAGGAAGCTATTGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTTTGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATAGCTTTTCCATGAGTCTTTCGTTTTATCAGCATTTTTTTAG
----------------------------------------------------GGAATGTTGTCTGGTTCAA 	2
----------------------------------------------------GGAATGTTGTCTGGTTCAAGG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------TCTCGAACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCAGGCTTCATTCCCC 	17

Overlaps with: MNEST041941 MNEST048848
Overlaps with miRBase pre-miRNAs: osa-MIR166e
HuntMi prediction: true miRNA