miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCGATAAACCTCTGCATCCAG

selected species: Arabidopsis thaliana

17 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
--------------------------------GGAGGCAGCGGTTCATCGAT 	1
------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	3
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	1
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	42
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	2
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
---------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	1

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM304282	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
--------------------------------GGAGGCAGCGGTTCATCGAT 	1
---------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	3
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	42
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	2
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM415786-5994	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
-------------------------------TGGAGGCAGCGGTTCATCGATC 	88
-------------------------------TGGAGGCAGCGGTTCATCGAT 	2
--------------------------------GGAGGCAGCGGTTCATCGATC 	54
--------------------------------GGAGGCAGCGGTTCATCGA 	1
----------------------------------AGGCAGCGGTTCATCGATCAAT 	3
----------------------------------AGGCAGCGGTTCATCGATCAA 	111
----------------------------------AGGCAGCGGTTCATCGATC 	1
-----------------------------------GGCAGCGGTTCATCGATCAATT 	1
-----------------------------------GGCAGCGGTTCATCGATCAAT 	12
------------------------------------GCAGCGGTTCATCGATCAATT 	1
----------------------------------------------------------------------------------------------CGATCGATAAACCTCTGCATC 	2
------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	3
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	6
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	198
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	3
--------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	2

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM415785	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
-------------------------------TGGAGGCAGCGGTTCATCGATC 	40
-------------------------------TGGAGGCAGCGGTTCATCGAT 	1
-------------------------------TGGAGGCAGCGGTTCATCGA 	1
--------------------------------GGAGGCAGCGGTTCATCGATC 	11
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	3
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	253
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM415785	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
-------------------------------TGGAGGCAGCGGTTCATCGATC 	40
-------------------------------TGGAGGCAGCGGTTCATCGAT 	1
-------------------------------TGGAGGCAGCGGTTCATCGA 	1
--------------------------------GGAGGCAGCGGTTCATCGATC 	11
----------------------------------AGGCAGCGGTTCATCGATCAAT 	1
-----------------------------------GGCAGCGGTTCATCGATCAAT 	2
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	3
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	253
---------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	1

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM366870	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
----------------------------------AGGCAGCGGTTCATCGATCAA 	1
----------------------------------------------------------------------------------------------CGATCGATAAACCTCTGCATC 	1
------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	5
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	3
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	156
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
--------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAGC 	1
---------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	4

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM366870	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
---------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	5
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	3
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	156
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAGC 	1
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	4

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM366869	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	13
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM366869	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	13
---------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	2

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM304284	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
--------------------------------GGAGGCAGCGGTTCATCGATC 	1
---------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	33
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	7

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM304284	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
--------------------------------GGAGGCAGCGGTTCATCGATC 	1
----------------------------------------------------------------------------------------------CGATCGATAAACCTCTGCATC 	1
------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	1
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	33
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	7

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM366866	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
-----------------------------------GGCAGCGGTTCATCGATCAATT 	1
------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	3
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	6
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	93
---------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	7

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Arabidopsis thaliana	GSM366866	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
----------------------------------AGGCAGCGGTTCATCGATCTC 	1
---------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	3
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	6
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	93
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	7

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Arabidopsis thaliana	GSM304285	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	5

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Arabidopsis thaliana	GSM304285	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	5

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Arabidopsis thaliana	GSM518432-13544	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

TGATTTATGAATGAGGAAAGAGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAATATTTATTTTTGTTTACAAAAGCAAGAATCGATCGATAAACCTCTGCATCCAGCGCTGCTTGCTCTTCATGACTTTTGTTTA
-------------------------------TGGAGGCAGCGGTTCATCGATC 	1
--------------------------------GGAGGCAGCGGTTCATCGA 	1
-----------------------------------GGCAGCGGTTCATCGATCAA 	1
----------------------------------------------------------------------------------------------CGATCGATAAACCTCTGCATC 	2
-----------------------------------------------------------------------------------------------GATCGATAAACCTCTGCATCC 	1
------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	1
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	198
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	2
-------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	4
--------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAGC 	1
---------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	4
-------------------------------------------------------------------------------------------------------AACCTCTGCATCCAGCGCTGC 	1

Overlaps with: MNEST047354
Overlaps with miRBase pre-miRNAs: ath-MIR162b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Arabidopsis thaliana	GSM518432-13544	TCGATAAACCTCTGCATCCAG	GGAGGCAGCGGTTCATCGATC	down	3	0

Secondary structure

GGAGTTTAGTTGGAAGAAGAGTGAGAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGAACACATTAAAAATGTAAAAGCATGAATAGATCGATAAACCTCTGCATCCAGCGTTTGCCTCTTGTATCTTTCTTATTGAC
-------------------------------TGGAGGCAGCGGTTCATCGATC 	1
--------------------------------GGAGGCAGCGGTTCATCGA 	1
---------------------------------GAGGCAGCGGTTCATCGATCT 	5
----------------------------------AGGCAGCGGTTCATCGATCTC 	3
-----------------------------------GGCAGCGGTTCATCGATCT 	2
--------------------------------------------------------------------------------------------GATCGATAAACCTCTGCATCC 	1
---------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	198
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	2
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	4
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAGC 	1
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	4
----------------------------------------------------------------------------------------------------AACCTCTGCATCCAGCGTTTG 	1

HuntMi prediction: true miRNA