miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCGATAAACCTCTGCATCCAG

selected species: Oryza sativa

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM693280	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------ATGCCTGGGCGCAGTGGTTTA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	199

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM571078-22531	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------------GGGCGCAGTGGTTTATCGATC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	229
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	5

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM520638-18676	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------ATGCCTGGGCGCAGTGGTTTA 	1
---------------------TGGGCGCAGTGGTTTATCGATC 	1
----------------------GGGCGCAGTGGTTTATCGATC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	13
---------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCAG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	13
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	1679
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	16

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM686040-31373	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	378
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	14

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM520640-18679	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------ATGCCTGGGCGCAGTGGTTTA 	1
----------------------GGGCGCAGTGGTTTATCGATC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------GGGAATCGATCGATAAACCTCTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	30
-----------------------------------------------------------------------------------------------------------------------------------------------------ATCGATCGATAAACCTCTGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCAG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	11
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	1222
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	12

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM571077-22529	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
-----------------------GGCGCAGTGGTTTATCGATC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	199
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	7

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM686039-31370	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
---------------------TGGGCGCAGTGGTTTATCGATC 	1
----------------------GGGCGCAGTGGTTTATCGATC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	514
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	11

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM520634-18667	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
-------------------------------------------------------------------------------------------------------------------------------------------------GGGAATCGATCGATAAACCTCTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	39
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM520636-18672	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------CGATCGATAAACCTCTGCATC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------GATCGATAAACCTCTGCATC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	131

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM520635-18669	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
------------------------------TGGTTTATCGATCCCTTCCCTGCCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------GGGAATCGATCGATAAACCTCTGC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGTTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	52

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Oryza sativa	GSM520637-18674	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	111
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	1

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Oryza sativa	GSM693279	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
---------------------TGGGCGCAGTGGTTTATCGATC 	1
------------------------------------------------------------------------------------------------------------------------------------------ACAACGCGGGAATCGATCGAT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	209
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	2

HuntMi prediction: not a miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Oryza sativa	GSM520639-18678	TCGATAAACCTCTGCATCCAG	GGGCGCAGTGGTTTATCGATC	down	2	0

Secondary structure

TGGGGGGTTGGTGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCCTTTTTGTGTTC
---------------------------------TTTATCGATCCCTTCCCTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------AATCGATCGATAAACCTCTGC 	54
---------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATAAACCTCTGCATCCAG 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	30
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	2149
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGTT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	8
------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	37

HuntMi prediction: not a miRNA