miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGATAAACCTCTGCATCCAG

selected species: Solanum lycopersicum



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TCGATAAACCTCTGCATCCAG GGAGGCAGCGGTTCATCGATC down 3 0


Secondary structure

TTCGAGTATTTGTTTAGTTGGTTGAAGACACTGGAGGCAGCGGTTCATCGATCCGTTCCCTGGAAGCTGAATATATATATACGCAAAAATACAGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGTGCTTAACCCCTAAGGATTTTTTTTTCTT
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	2
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	36
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAGT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 TCGATAAACCTCTGCATCCAG GGAGGCAGCGGTTCATCGATC down 3 0


Secondary structure

GGTGAGAACACTGGAGGCAGCGGTTCATCGATCTGTTCCCTGAAAAGCGATAAATACAGCAACAGGAAGCGATCGATAAACCTCTGCATCCAGTGCTTAACC
-----------------------------------------------------------------------ATCGATAAACCTCTGCATCCAG 	2
------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	2
------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	36
------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	1
-------------------------------------------------------------------------CGATAAACCTCTGCATCCAGT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304986 TCGATAAACCTCTGCATCCAG GGAGGCAGCGGTTCATCGATC down 3 0


Secondary structure

TTCGAGTATTTGTTTAGTTGGTTGAAGACACTGGAGGCAGCGGTTCATCGATCCGTTCCCTGGAAGCTGAATATATATATACGCAAAAATACAGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGTGCTTAACCCCTAAGGATTTTTTTTTCTT
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	1
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	138
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	3
-----------------------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	3
------------------------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAGT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304986 TCGATAAACCTCTGCATCCAG GGAGGCAGCGGTTCATCGATC down 3 0


Secondary structure

GGTGAGAACACTGGAGGCAGCGGTTCATCGATCTGTTCCCTGAAAAGCGATAAATACAGCAACAGGAAGCGATCGATAAACCTCTGCATCCAGTGCTTAACC
-----------------------------------------------------------------------ATCGATAAACCTCTGCATCCAG 	8
-----------------------------------------------------------------------ATCGATAAACCTCTGCATCCA 	1
------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGT 	1
------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	138
------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	3
------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	3
-------------------------------------------------------------------------CGATAAACCTCTGCATCCAGT 	2


HuntMi prediction: true miRNA