miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCGATAAACCTCTGCATCCAG

selected species: Vitis vinifera

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	TCGATAAACCTCTGCATCCAG	GGATGCAGCGGTTCATCGATC	down	2	0

Secondary structure

TGGGTTTGAGTTGGGGTTGGTTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACTCCCTCTCTCTTATTCTCTCTT
--------------------------------GGATGCAGCGGTTCATCGATC 	3
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	515
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	1
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	2

Overlaps with: MNEST046792
Overlaps with miRBase pre-miRNAs: vvi-MIR162
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458930-2718	TCGATAAACCTCTGCATCCAG	GGATGCAGCGGTTCATCGATC	down	2	0

Secondary structure

TGGGTTTGAGTTGGGGTTGGTTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACTCCCTCTCTCTTATTCTCTCTT
--------------------------------GGATGCAGCGGTTCATCGATC 	21
--------------------------------GGATGCAGCGGTTCATCGA 	1
---------------------------------GATGCAGCGGTTCATCGATC 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	1519
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	9
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	3
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	4
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	4

Overlaps with: MNEST046792
Overlaps with miRBase pre-miRNAs: vvi-MIR162
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458929-2717	TCGATAAACCTCTGCATCCAG	GGATGCAGCGGTTCATCGATC	down	2	0

Secondary structure

TGGGTTTGAGTTGGGGTTGGTTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACTCCCTCTCTCTTATTCTCTCTT
-----------------------------ACTGGATGCAGCGGTTCATCGATCT 	1
-----------------------------ACTGGATGCAGCGGTTCATCGATC 	3
-----------------------------ACTGGATGCAGCGGTTCATCGAT 	1
--------------------------------GGATGCAGCGGTTCATCGATC 	29
--------------------------------GGATGCAGCGGTTCATCGAT 	1
-------------------------------------------------------------------------AAAAAGCAGATCAAGAATCGG 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGCGT 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGC 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	2831
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	9
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCC 	2
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	12
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCA 	1
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	14

Overlaps with: MNEST046792
Overlaps with miRBase pre-miRNAs: vvi-MIR162
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458928-2716	TCGATAAACCTCTGCATCCAG	GGATGCAGCGGTTCATCGATC	down	2	0

Secondary structure

TGGGTTTGAGTTGGGGTTGGTTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACTCCCTCTCTCTTATTCTCTCTT
-----------------------------ACTGGATGCAGCGGTTCATCGATCT 	1
-----------------------------ACTGGATGCAGCGGTTCATCGATC 	1
--------------------------------GGATGCAGCGGTTCATCGATC 	14
--------------------------------GGATGCAGCGGTTCATCGAT 	1
-------------------------------------CAGCGGTTCATCGATCTCT 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAGCGT 	1
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCAG 	931
----------------------------------------------------------------------------------------------TCGATAAACCTCTGCATCCA 	2
-----------------------------------------------------------------------------------------------CGATAAACCTCTGCATCCAG 	6
------------------------------------------------------------------------------------------------GATAAACCTCTGCATCCAG 	4

Overlaps with: MNEST046792
Overlaps with miRBase pre-miRNAs: vvi-MIR162
HuntMi prediction: true miRNA