miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGATAAGCCTCTGCATCCAG

selected species: Oryza sativa



11 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
------ATGCCTGGGCGCAGTGGTTTA 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	55
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAGA 	1
---------------------------------------------------------------------------------------------------------GATAAGCCTCTGCATCCAG 	2

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571078-22531 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
------------GGGCGCAGTGGTTTATCGATC 	2
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	27
---------------------------------------------------------------------------------------------------------GATAAGCCTCTGCATCCAG 	2
------------------------------------------------------------------------------------------------------------AAGCCTCTGCATCCAGATCTC 	1

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
------ATGCCTGGGCGCAGTGGTTTA 	1
-----------TGGGCGCAGTGGTTTATCGATC 	1
------------GGGCGCAGTGGTTTATCGATC 	1
------------------AGTGGTTTATCGATCTCTT 	1
-------------------------------------------------------------------------------------------------AATCGATCGATAAGCCTCTGC 	3
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCC 	3
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	160
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCA 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAGA 	8
--------------------------------------------------------------------------------------------------------CGATAAGCCTCTGCATCCAG 	1
---------------------------------------------------------------------------------------------------------GATAAGCCTCTGCATCCAG 	1

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686040-31373 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAGA 	4
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	49
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCA 	1
--------------------------------------------------------------------------------------------------------CGATAAGCCTCTGCATCCAG 	1
---------------------------------------------------------------------------------------------------------GATAAGCCTCTGCATCCAG 	1

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520640-18679 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
------ATGCCTGGGCGCAGTGGTTTA 	1
------------GGGCGCAGTGGTTTATCGATC 	2
-------------------------------------------------------------------------------------------------AATCGATCGATAAGCCTCTGC 	1
------------------------------------------------------------------------------------------------------ATCGATAAGCCTCTGCATCCAG 	3
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCC 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	114
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAGA 	5

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571077-22529 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
-------------GGCGCAGTGGTTTATCGATC 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	22

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686039-31370 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
-----------TGGGCGCAGTGGTTTATCGATC 	1
------------GGGCGCAGTGGTTTATCGATC 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAGA 	4
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	67
--------------------------------------------------------------------------------------------------------CGATAAGCCTCTGCATCCAG 	1
---------------------------------------------------------------------------------------------------------GATAAGCCTCTGCATCCAG 	2

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520636-18672 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
------------------AGTGGTTTATCGATCTCTTCCCTGC 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	14
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCA 	1

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520637-18674 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	6

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM693279 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
-----------TGGGCGCAGTGGTTTATCGATC 	1
------------------------------------------------------------------------------------------ACGCAGGAATCGATCGATAAG 	1
-------------------------------------------------------------------------------------------------AATCGATCGATAAGCCTCTGC 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	44

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520639-18678 TCGATAAGCCTCTGCATCCAG GGGCGCAGTGGTTTATCGATC down 2 0


Secondary structure

TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTT
-------------------------------------------------------------------------------------------------AATCGATCGATAAGCCTCTGC 	1
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAG 	116
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCAGA 	14
-------------------------------------------------------------------------------------------------------TCGATAAGCCTCTGCATCCA 	4
--------------------------------------------------------------------------------------------------------CGATAAGCCTCTGCATCCAG 	1
---------------------------------------------------------------------------------------------------------GATAAGCCTCTGCATCCAG 	3

Overlaps with: MNEST045279 MNEST048836
Overlaps with miRBase pre-miRNAs: osa-MIR162b
HuntMi prediction: true miRNA