miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGCTCTGATACCAAATTGATG

selected species: Arabidopsis thaliana



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TCGCTCTGATACCAAATTGATG TCAATTGCTATCAGAGCAACG down 3 1


Secondary structure

CCATCAGTCGGTTTCCATCACGTCAATTGCTATCAGAGCAACGCATGATGTATAATAACTAAGCGTCGCTCTGATACCAAATTGATGCAATGGAAACATCGATTTT
-----------------------------------------------------------------TCGCTCTGATACCAAATTGATG 	67
-----------------------------------------------------------------TCGCTCTGATACCAAATTGAT 	3
-------------------------------------------------------------------GCTCTGATACCAAATTGATG 	1

Overlaps with: MNEST040170 MNEST047076
Overlaps with miRBase pre-miRNAs: ath-MIR845b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304284 TCGCTCTGATACCAAATTGATG TCAATTGCTATCAGAGCAACG down 3 1


Secondary structure

CCATCAGTCGGTTTCCATCACGTCAATTGCTATCAGAGCAACGCATGATGTATAATAACTAAGCGTCGCTCTGATACCAAATTGATGCAATGGAAACATCGATTTT
-----------------------------------------------------------------TCGCTCTGATACCAAATTGATG 	26
-----------------------------------------------------------------TCGCTCTGATACCAAATTGAT 	1
-----------------------------------------------------------------TCGCTCTGATACCAAATTGA 	1
-------------------------------------------------------------------GCTCTGATACCAAATTGATG 	1

Overlaps with: MNEST040170 MNEST047076
Overlaps with miRBase pre-miRNAs: ath-MIR845b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM304283 TCGCTCTGATACCAAATTGATG TCAATTGCTATCAGAGCAACG down 3 1


Secondary structure

CCATCAGTCGGTTTCCATCACGTCAATTGCTATCAGAGCAACGCATGATGTATAATAACTAAGCGTCGCTCTGATACCAAATTGATGCAATGGAAACATCGATTTT
-----------------------------------------------------------------TCGCTCTGATACCAAATTGATG 	10

Overlaps with: MNEST040170 MNEST047076
Overlaps with miRBase pre-miRNAs: ath-MIR845b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM518432-13544 TCGCTCTGATACCAAATTGATG TCAATTGCTATCAGAGCAACG down 3 1


Secondary structure

CCATCAGTCGGTTTCCATCACGTCAATTGCTATCAGAGCAACGCATGATGTATAATAACTAAGCGTCGCTCTGATACCAAATTGATGCAATGGAAACATCGATTTT
-----------------------------------------------------------------TCGCTCTGATACCAAATTGATG 	7

Overlaps with: MNEST040170 MNEST047076
Overlaps with miRBase pre-miRNAs: ath-MIR845b
HuntMi prediction: true miRNA