miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGCTTGGTGCAGATCGGGAC

selected species: Oryza sativa



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	3
------------------------------CTCGCTTGGTGCAGATCGGGA 	1
-------------------------------TCGCTTGGTGCAGATCGGGACC 	146
-------------------------------TCGCTTGGTGCAGATCGGGAC 	48678
-------------------------------TCGCTTGGTGCAGATCGGGA 	151
-------------------------------TCGCTTGGTGCAGATCGGG 	63
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	47
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	7
--------------------------------CGCTTGGTGCAGATCGGGAC 	43
---------------------------------GCTTGGTGCAGATCGGGAC 	40
---------------------------------GCTTGGTGCAGATCGGGACCC 	1
------------------------------------TGGTGCAGATCGGGACCCGCC 	15
------------------------------------TGGTGCAGATCGGGACCCGCCGC 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	15
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	18
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	3


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571078-22531 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	69
------------------------------CTCGCTTGGTGCAGATCGGGA 	4
------------------------------CTCGCTTGGTGCAGATCGGGACC 	2
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	84
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	25
-------------------------------TCGCTTGGTGCAGATCGGGACC 	451
-------------------------------TCGCTTGGTGCAGATCGGGAC 	159068
-------------------------------TCGCTTGGTGCAGATCGGGA 	408
-------------------------------TCGCTTGGTGCAGATCGGG 	56
--------------------------------CGCTTGGTGCAGATCGGGAC 	614
--------------------------------CGCTTGGTGCAGATCGGGA 	5
--------------------------------CGCTTGGTGCAGATCGGGACC 	3
---------------------------------GCTTGGTGCAGATCGGGAC 	324
---------------------------------GCTTGGTGCAGATCGGGACCCG 	1
------------------------------------TGGTGCAGATCGGGACCCGCC 	7
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	46
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	1
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGAAT 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	111
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	11
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	23
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAA 	1
---------------------------------------------------------------------------------CGCCTTGCACCAAGTGAAT 	3


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
-----------ATGGCGCCGCCGCCTCGGG 	1
----------------------------GGCTCGCTTGGTGCAGATCGGGAC 	1
-----------------------------GCTCGCTTGGTGCAGATCGGGAC 	1
------------------------------CTCGCTTGGTGCAGATCGGGAC 	23
------------------------------CTCGCTTGGTGCAGATCGGG 	1
------------------------------CTCGCTTGGTGCAGATCGGGA 	24
------------------------------CTCGCTTGGTGCAGATCGGGACC 	1
-------------------------------TCGCTTGGTGCAGATCGGGA 	789
-------------------------------TCGCTTGGTGCAGATCGGGAC 	49598
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	6
-------------------------------TCGCTTGGTGCAGATCGGGACC 	670
-------------------------------TCGCTTGGTGCAGATCGGG 	663
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	7
-------------------------------TCGCTTGGTGCAGATCGGGACCCGC 	1
--------------------------------CGCTTGGTGCAGATCGGGA 	14
--------------------------------CGCTTGGTGCAGATCGGGACC 	3
--------------------------------CGCTTGGTGCAGATCGGGAC 	82
---------------------------------GCTTGGTGCAGATCGGGACC 	4
---------------------------------GCTTGGTGCAGATCGGGAC 	157
-----------------------------------TTGGTGCAGATCGGGACCCGC 	2
------------------------------------TGGTGCAGATCGGGACCCG 	1
------------------------------------TGGTGCAGATCGGGACCCGCC 	11
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	15
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGA 	2
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGT 	1
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGAAT 	3
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGA 	1
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGAAT 	18
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGA 	2
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	40
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAATC 	2
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	816
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGA 	82
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	21
---------------------------------------------------------------------------------CGCCTTGCACCAAGTGAAT 	5
------------------------------------------------------------------------------------CTTGCACCAAGTGAATCGGAG 	1
-------------------------------------------------------------------------------------TTGCACCAAGTGAATCGGAGC 	1


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686040-31373 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	8
------------------------------CTCGCTTGGTGCAGATCGGGA 	1
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	1
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	3
-------------------------------TCGCTTGGTGCAGATCGGGACC 	47
-------------------------------TCGCTTGGTGCAGATCGGGAC 	60746
-------------------------------TCGCTTGGTGCAGATCGGGA 	206
-------------------------------TCGCTTGGTGCAGATCGGG 	65
--------------------------------CGCTTGGTGCAGATCGGGACC 	1
--------------------------------CGCTTGGTGCAGATCGGGAC 	116
---------------------------------GCTTGGTGCAGATCGGGAC 	224
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	6
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTG 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGT 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	58
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	6
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	4
-----------------------------------------------------------------------------------------ACCAAGTGAATCGGAGCCGGCGTA 	2


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520640-18679 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
-------------------------TCGGGCTCGCTTGGTGCAGAT 	1
---------------------------GGGCTCGCTTGGTGCAGATCGGGA 	1
------------------------------CTCGCTTGGTGCAGATCGGGACCC 	4
------------------------------CTCGCTTGGTGCAGATCGGGAC 	10
------------------------------CTCGCTTGGTGCAGATCGGG 	2
------------------------------CTCGCTTGGTGCAGATCGGGA 	21
------------------------------CTCGCTTGGTGCAGATCGGGACC 	2
-------------------------------TCGCTTGGTGCAGATCGGGA 	388
-------------------------------TCGCTTGGTGCAGATCGGGAC 	42117
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	29
-------------------------------TCGCTTGGTGCAGATCGGGACC 	613
-------------------------------TCGCTTGGTGCAGATCGGG 	561
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	134
-------------------------------TCGCTTGGTGCAGATCGGGACCCGC 	1
--------------------------------CGCTTGGTGCAGATCGGGAC 	52
--------------------------------CGCTTGGTGCAGATCGGGA 	11
--------------------------------CGCTTGGTGCAGATCGGGACC 	4
--------------------------------CGCTTGGTGCAGATCGGGACCCG 	1
---------------------------------GCTTGGTGCAGATCGGGACC 	6
---------------------------------GCTTGGTGCAGATCGGGAC 	125
---------------------------------GCTTGGTGCAGATCGGGACCCG 	2
-----------------------------------TTGGTGCAGATCGGGACCCGC 	1
------------------------------------TGGTGCAGATCGGGACCCG 	1
------------------------------------TGGTGCAGATCGGGACCCGCC 	22
------------------------------------TGGTGCAGATCGGGACCCGCCGC 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAG 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	338
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAATC 	3
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	3
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGA 	29
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTG 	2
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGT 	10
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGAAT 	1
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGAAT 	5
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGA 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	24
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	368
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGA 	54
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAATCGGAG 	1
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAA 	2
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	14
---------------------------------------------------------------------------------CGCCTTGCACCAAGTGAAT 	7
------------------------------------------------------------------------------------CTTGCACCAAGTGAATCGGAG 	1


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571077-22529 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	76
------------------------------CTCGCTTGGTGCAGATCGGGACC 	1
------------------------------CTCGCTTGGTGCAGATCGGGA 	1
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	91
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	24
-------------------------------TCGCTTGGTGCAGATCGGGACC 	410
-------------------------------TCGCTTGGTGCAGATCGGGAC 	178813
-------------------------------TCGCTTGGTGCAGATCGGGA 	474
-------------------------------TCGCTTGGTGCAGATCGGG 	53
--------------------------------CGCTTGGTGCAGATCGGGAC 	619
--------------------------------CGCTTGGTGCAGATCGGGA 	5
--------------------------------CGCTTGGTGCAGATCGGGACCC 	1
--------------------------------CGCTTGGTGCAGATCGGGACC 	1
---------------------------------GCTTGGTGCAGATCGGGAC 	315
----------------------------------CTTGGTGCAGATCGGGACCCG 	1
------------------------------------TGGTGCAGATCGGGACCCGCC 	11
------------------------------------TGGTGCAGATCGGGACCCGCCGCC 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	31
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGAAT 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	108
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	10
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	8
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAA 	1
---------------------------------------------------------------------------------CGCCTTGCACCAAGTGAAT 	4
-----------------------------------------------------------------------------------------ACCAAGTGAATCGGAGCCGGCGTA 	2


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686039-31370 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	6
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	3
-------------------------------TCGCTTGGTGCAGATCGGGACC 	23
-------------------------------TCGCTTGGTGCAGATCGGGAC 	55840
-------------------------------TCGCTTGGTGCAGATCGGGA 	175
-------------------------------TCGCTTGGTGCAGATCGGG 	69
--------------------------------CGCTTGGTGCAGATCGGGACC 	1
--------------------------------CGCTTGGTGCAGATCGGGAC 	112
---------------------------------GCTTGGTGCAGATCGGGACC 	1
---------------------------------GCTTGGTGCAGATCGGGAC 	203
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	5
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	1
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGAA 	1
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGA 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	72
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	2
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGA 	1
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	2
-----------------------------------------------------------------------------------------ACCAAGTGAATCGGAGCCGGCGTA 	1


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520637-18674 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	2
------------------------------CTCGCTTGGTGCAGATCGGGACCCG 	1
------------------------------CTCGCTTGGTGCAGATCGGGA 	1
-------------------------------TCGCTTGGTGCAGATCGGGA 	94
-------------------------------TCGCTTGGTGCAGATCGGGAC 	4707
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	1
-------------------------------TCGCTTGGTGCAGATCGGGACC 	68
-------------------------------TCGCTTGGTGCAGATCGGG 	118
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	14
--------------------------------CGCTTGGTGCAGATCGGGAC 	5
---------------------------------GCTTGGTGCAGATCGGGAC 	11
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	12
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGA 	2
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	22
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGA 	4
-----------------------------------------------------------------------------------CCTTGCACCAAGTGAATCGGAG 	1
-------------------------------------------------------------------------------------TTGCACCAAGTGAATCGGA 	1
-----------------------------------------------------------------------------------------------TGAATCGGAGCCGGCGTAGC 	1


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM693279 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
------------------------------CTCGCTTGGTGCAGATCGGGAC 	43
------------------------------CTCGCTTGGTGCAGATCGGGA 	1
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	193
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	56
-------------------------------TCGCTTGGTGCAGATCGGGACC 	1366
-------------------------------TCGCTTGGTGCAGATCGGGAC 	374240
-------------------------------TCGCTTGGTGCAGATCGGGA 	1060
-------------------------------TCGCTTGGTGCAGATCGGG 	533
--------------------------------CGCTTGGTGCAGATCGGGAC 	358
--------------------------------CGCTTGGTGCAGATCGGGACC 	2
--------------------------------CGCTTGGTGCAGATCGGGA 	2
--------------------------------CGCTTGGTGCAGATCGGGACCCG 	1
---------------------------------GCTTGGTGCAGATCGGGAC 	264
---------------------------------GCTTGGTGCAGATCGGGACC 	1
------------------------------------TGGTGCAGATCGGGACCCGCC 	41
------------------------------------TGGTGCAGATCGGGACCCGC 	2
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	31
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGT 	2
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAG 	1
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	90
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGA 	3
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAATC 	1
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	10
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAATC 	1
------------------------------------------------------------------------------------CTTGCACCAAGTGAATCGGAG 	1
--------------------------------------------------------------------------------------TGCACCAAGTGAATCGGAGCCG 	1


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM520639-18678 TCGCTTGGTGCAGATCGGGAC CCCGCCTTGCACCAAGTGAAT up 3 0


Secondary structure

CGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGC
-------------------------TCGGGCTCGCTTGGTGCAGATC 	1
---------------------------GGGCTCGCTTGGTGCAGATCGGGA 	1
----------------------------GGCTCGCTTGGTGCAGATCGGGA 	1
------------------------------CTCGCTTGGTGCAGATCGGGAC 	11
------------------------------CTCGCTTGGTGCAGATCGGGA 	24
-------------------------------TCGCTTGGTGCAGATCGGGACC 	752
-------------------------------TCGCTTGGTGCAGATCGGG 	1089
-------------------------------TCGCTTGGTGCAGATCGGGA 	496
-------------------------------TCGCTTGGTGCAGATCGGGACCCG 	167
-------------------------------TCGCTTGGTGCAGATCGGGAC 	50612
-------------------------------TCGCTTGGTGCAGATCGGGACCC 	29
--------------------------------CGCTTGGTGCAGATCGGGAC 	57
--------------------------------CGCTTGGTGCAGATCGGGACC 	2
--------------------------------CGCTTGGTGCAGATCGGGA 	1
---------------------------------GCTTGGTGCAGATCGGGAC 	138
---------------------------------GCTTGGTGCAGATCGGGACC 	12
---------------------------------GCTTGGTGCAGATCGGGACCCG 	2
-----------------------------------TTGGTGCAGATCGGGACCCGC 	2
------------------------------------TGGTGCAGATCGGGACCCGCC 	32
----------------------------------------GCAGATCGGGACCCGCCGC 	1
------------------------------------------------------------GCCGCTGCCGGGGCCGGAT 	2
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAAT 	299
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAATC 	1
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGA 	198
----------------------------------------------------------------------------GATCCCGCCTTGCACCAAGTGAA 	9
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGA 	1
-----------------------------------------------------------------------------ATCCCGCCTTGCACCAAGTGAAT 	1
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGA 	5
------------------------------------------------------------------------------TCCCGCCTTGCACCAAGTGAAT 	12
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGA 	225
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAAT 	243
-------------------------------------------------------------------------------CCCGCCTTGCACCAAGTGAA 	29
--------------------------------------------------------------------------------CCGCCTTGCACCAAGTGAAT 	15
-------------------------------------------------------------------------------------TTGCACCAAGTGAATCGGAGC 	2
-----------------------------------------------------------------------------------------ACCAAGTGAATCGGAGCCGGCGTA 	1


Overlaps with: MNEST041961 MNEST041962 MNEST048871 MNEST048872 MNEST048873
Overlaps with miRBase pre-miRNAs: osa-MIR168a
HuntMi prediction: true miRNA