miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGCTTGGTGCAGGTCGGGAA

selected species: Arabidopsis thaliana



26 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	4
---------------------TCGCTTGGTGCAGGTCGGGAACC 	9
---------------------TCGCTTGGTGCAGGTCGGGAAC 	165
---------------------TCGCTTGGTGCAGGTCGGGAA 	1822
---------------------TCGCTTGGTGCAGGTCGGGA 	219
---------------------TCGCTTGGTGCAGGTCGGG 	7
----------------------CGCTTGGTGCAGGTCGGGAACCA 	1
----------------------CGCTTGGTGCAGGTCGGGAACC 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	21
----------------------CGCTTGGTGCAGGTCGGGAA 	11
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	3
------------------------CTTGGTGCAGGTCGGGAACCA 	3
---------------------------------------------------------------------------------ATTGGTTTGTGAGCAGGGATTGGA 	1
-----------------------------------------------------------------------------------TGGTTTGTGAGCAGGGATTGGAT 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	1
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	1
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGA 	4
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	3
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	3
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	4
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	82
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	66
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	20


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304282 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	165
---------------------TCGCTTGGTGCAGGTCGGGAA 	1822
---------------------TCGCTTGGTGCAGGTCGGGA 	219
---------------------TCGCTTGGTGCAGGTCGGG 	7
----------------------CGCTTGGTGCAGGTCGGGAAC 	21
----------------------CGCTTGGTGCAGGTCGGGAA 	11
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	3
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAA 	1


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415786-5994 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
-----------------GGATTCGCTTGGTGCAGGTCG 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	1
---------------------TCGCTTGGTGCAGGTCGGGAACC 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	938
---------------------TCGCTTGGTGCAGGTCGGGAA 	23740
---------------------TCGCTTGGTGCAGGTCGGGA 	44
---------------------TCGCTTGGTGCAGGTCGGG 	2
----------------------CGCTTGGTGCAGGTCGGGAAC 	58
----------------------CGCTTGGTGCAGGTCGGGAA 	90
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGAAC 	4
-----------------------GCTTGGTGCAGGTCGGGAA 	41
------------------------CTTGGTGCAGGTCGGGAACCA 	3
---------------------------GGTGCAGGTCGGGAACCAATT 	1
------------------------------------------------------------------------------------GGTTTGTGAGCAGGGATTGGAT 	1
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	2
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAATC 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	1
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	2
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	3
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	1
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	35
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	1
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	1
------------------------------------------------------------------------------------------------------------CGCCTTGCATCAACTGAAT 	1
--------------------------------------------------------------------------------------------------------------CCTTGCATCAACTGAATCGGA 	4


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415786-5994 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
-----------------GGATTCGCTTGGTGCAGGTCG 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACT 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	938
---------------------TCGCTTGGTGCAGGTCGGGAA 	23740
---------------------TCGCTTGGTGCAGGTCGGGA 	44
---------------------TCGCTTGGTGCAGGTCGGG 	2
----------------------CGCTTGGTGCAGGTCGGGAACT 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	58
----------------------CGCTTGGTGCAGGTCGGGAA 	90
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGAAC 	4
-----------------------GCTTGGTGCAGGTCGGGAA 	41
------------------------------------------------------------------------------------------TCCCGTCTTGTATCAACTGAAT 	1
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAAT 	2


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM424847-4989 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACC 	3
---------------------TCGCTTGGTGCAGGTCGGGAAC 	892
---------------------TCGCTTGGTGCAGGTCGGGAA 	7584
---------------------TCGCTTGGTGCAGGTCGGGA 	19
---------------------TCGCTTGGTGCAGGTCGGG 	1
----------------------CGCTTGGTGCAGGTCGGGAACC 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	22
----------------------CGCTTGGTGCAGGTCGGGAA 	16
-----------------------GCTTGGTGCAGGTCGGGAAC 	3
-----------------------GCTTGGTGCAGGTCGGGAA 	58
----------------------------------------------------------------------------------TTGGTTTGTGAGCAGGGATTGGAT 	1
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	2
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	28
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	3


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM424847-4989 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
-------------TCTCGGATTCGCTTGGTGCAGGTC 	1
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	892
---------------------TCGCTTGGTGCAGGTCGGGAA 	7584
---------------------TCGCTTGGTGCAGGTCGGGA 	19
---------------------TCGCTTGGTGCAGGTCGGG 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	22
----------------------CGCTTGGTGCAGGTCGGGAA 	16
-----------------------GCTTGGTGCAGGTCGGGAAC 	3
-----------------------GCTTGGTGCAGGTCGGGAA 	58


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM415785 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
---------------------TCGCTTGGTGCAGGTCGGGAACC 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	137
---------------------TCGCTTGGTGCAGGTCGGGAA 	295
----------------------CGCTTGGTGCAGGTCGGGAAC 	3
----------------------CGCTTGGTGCAGGTCGGGAA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	1
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	4
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	7
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	2
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAA 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	27
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	2
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	285
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	2
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	4


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM415785 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	137
---------------------TCGCTTGGTGCAGGTCGGGAA 	295
----------------------CGCTTGGTGCAGGTCGGGAAC 	3
----------------------CGCTTGGTGCAGGTCGGGAA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	1


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM366870 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	289
---------------------TCGCTTGGTGCAGGTCGGGA 	11
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACC 	9
---------------------TCGCTTGGTGCAGGTCGGGAA 	3298
---------------------TCGCTTGGTGCAGGTCGGG 	2
----------------------CGCTTGGTGCAGGTCGGGAACC 	5
----------------------CGCTTGGTGCAGGTCGGGAA 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	19
-----------------------GCTTGGTGCAGGTCGGGAA 	20
-----------------------GCTTGGTGCAGGTCGGGAAC 	1
------------------------CTTGGTGCAGGTCGGGAACCA 	7
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATC 	1
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	2
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	10
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	3
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	3
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	4
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGA 	7
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAA 	5
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACT 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	5
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	14
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	2
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	348
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	5
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	18
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	5


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM366870 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	289
---------------------TCGCTTGGTGCAGGTCGGGA 	11
---------------------TCGCTTGGTGCAGGTCGGGAA 	3298
---------------------TCGCTTGGTGCAGGTCGGG 	2
----------------------CGCTTGGTGCAGGTCGGGAA 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	19
-----------------------GCTTGGTGCAGGTCGGGAA 	20
-----------------------GCTTGGTGCAGGTCGGGAAC 	1
------------------------------------------------------------------------------------------TCCCGTCTTGTATCAACTGAAT 	19
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAAT 	27


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM366869 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	45
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	21
---------------------TCGCTTGGTGCAGGTCGGGAA 	3258
---------------------TCGCTTGGTGCAGGTCGGGA 	12
---------------------TCGCTTGGTGCAGGTCGGGAACC 	3
---------------------TCGCTTGGTGCAGGTCGGG 	6
----------------------CGCTTGGTGCAGGTCGGGAA 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	5
-----------------------GCTTGGTGCAGGTCGGGAA 	24
-----------------------GCTTGGTGCAGGTCGGGAAC 	2
------------------------CTTGGTGCAGGTCGGGAACCA 	3
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	2
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	2
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	2
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGA 	2
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	2
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	2
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	1
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	1
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	138
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	10
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAA 	1
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	1


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Arabidopsis thaliana GSM366869 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	45
---------------------TCGCTTGGTGCAGGTCGGGAACT 	1
---------------------TCGCTTGGTGCAGGTCGGGAA 	3258
---------------------TCGCTTGGTGCAGGTCGGGA 	12
---------------------TCGCTTGGTGCAGGTCGGGAACTG 	1
---------------------TCGCTTGGTGCAGGTCGGG 	6
----------------------CGCTTGGTGCAGGTCGGGAA 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	5
-----------------------GCTTGGTGCAGGTCGGGAA 	24
-----------------------GCTTGGTGCAGGTCGGGAAC 	2
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAAT 	5


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Arabidopsis thaliana GSM304284 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	10
---------------------TCGCTTGGTGCAGGTCGGGAACC 	4
---------------------TCGCTTGGTGCAGGTCGGGAAC 	88
---------------------TCGCTTGGTGCAGGTCGGGAA 	621
---------------------TCGCTTGGTGCAGGTCGGGA 	129
---------------------TCGCTTGGTGCAGGTCGGG 	1
----------------------CGCTTGGTGCAGGTCGGGAACC 	3
----------------------CGCTTGGTGCAGGTCGGGAAC 	8
----------------------CGCTTGGTGCAGGTCGGGAA 	4
-----------------------GCTTGGTGCAGGTCGGGAA 	2
------------------------CTTGGTGCAGGTCGGGAACCA 	1
------------------------------------------CCAATTCGGCTGACACAGCCTCGT 	1
-----------------------------------------------------------------------------------TGGTTTGTGAGCAGGGATTGGAT 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	3
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	3
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	41
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	100
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	29
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	1


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Arabidopsis thaliana GSM304284 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	88
---------------------TCGCTTGGTGCAGGTCGGGAA 	621
---------------------TCGCTTGGTGCAGGTCGGGA 	129
---------------------TCGCTTGGTGCAGGTCGGG 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	8
----------------------CGCTTGGTGCAGGTCGGGAA 	4
-----------------------GCTTGGTGCAGGTCGGGAA 	2
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGA 	1


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Arabidopsis thaliana GSM366866 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	5
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	4521
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	62
---------------------TCGCTTGGTGCAGGTCGGGAA 	36259
---------------------TCGCTTGGTGCAGGTCGGGA 	77
---------------------TCGCTTGGTGCAGGTCGGGAACC 	78
---------------------TCGCTTGGTGCAGGTCGGG 	16
----------------------CGCTTGGTGCAGGTCGGGAACCA 	26
----------------------CGCTTGGTGCAGGTCGGGAA 	64
----------------------CGCTTGGTGCAGGTCGGGA 	1
----------------------CGCTTGGTGCAGGTCGGGAACC 	28
----------------------CGCTTGGTGCAGGTCGGGAAC 	303
-----------------------GCTTGGTGCAGGTCGGGAA 	213
-----------------------GCTTGGTGCAGGTCGGGAAC 	40
-----------------------GCTTGGTGCAGGTCGGGAACCA 	1
-----------------------GCTTGGTGCAGGTCGGGAACC 	3
------------------------CTTGGTGCAGGTCGGGAACC 	1
------------------------CTTGGTGCAGGTCGGGAAC 	5
------------------------CTTGGTGCAGGTCGGGAACCA 	50
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	10
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTG 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	2
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAA 	2
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	5
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	9
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	15
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	5
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	772
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	25
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	7
--------------------------------------------------------------------------------------------------------------CCTTGCATCAACTGAATCGGA 	2


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Arabidopsis thaliana GSM366866 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
-------------TCTCGGATTCGCTTGGTGCAG 	1
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	5
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	4521
---------------------TCGCTTGGTGCAGGTCGGGAACT 	6
---------------------TCGCTTGGTGCAGGTCGGGAA 	36259
---------------------TCGCTTGGTGCAGGTCGGGA 	77
---------------------TCGCTTGGTGCAGGTCGGG 	16
----------------------CGCTTGGTGCAGGTCGGGAACT 	4
----------------------CGCTTGGTGCAGGTCGGGAA 	64
----------------------CGCTTGGTGCAGGTCGGGA 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	303
-----------------------GCTTGGTGCAGGTCGGGAA 	213
-----------------------GCTTGGTGCAGGTCGGGAAC 	40
------------------------CTTGGTGCAGGTCGGGAAC 	5
-----------------------------------------------------------------------------------------CTCCCGTCTTGTATCAACTGAAT 	1
------------------------------------------------------------------------------------------TCCCGTCTTGTATCAACTGAAT 	13
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAA 	1
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAAT 	36
-----------------------------------------------------------------------------------------------TCTTGTATCAACTGAATCGGAG 	1


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Arabidopsis thaliana GSM424848-4990 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	1
---------------------TCGCTTGGTGCAGGTCGGGAACC 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	718
---------------------TCGCTTGGTGCAGGTCGGGAA 	9932
---------------------TCGCTTGGTGCAGGTCGGGA 	27
---------------------TCGCTTGGTGCAGGTCGGG 	4
----------------------CGCTTGGTGCAGGTCGGGAACC 	2
----------------------CGCTTGGTGCAGGTCGGGAAC 	16
----------------------CGCTTGGTGCAGGTCGGGAA 	5
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGAAC 	4
-----------------------GCTTGGTGCAGGTCGGGAA 	66
------------------------CTTGGTGCAGGTCGGGAAC 	3
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAACT 	1
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	14
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	9


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Arabidopsis thaliana GSM424848-4990 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
-------------TCTCGGATTCGCTTGGTGCAGGTC 	2
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACTG 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	718
---------------------TCGCTTGGTGCAGGTCGGGAA 	9932
---------------------TCGCTTGGTGCAGGTCGGGA 	27
---------------------TCGCTTGGTGCAGGTCGGG 	4
----------------------CGCTTGGTGCAGGTCGGGAAC 	16
----------------------CGCTTGGTGCAGGTCGGGAA 	5
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGAAC 	4
-----------------------GCTTGGTGCAGGTCGGGAA 	66
------------------------CTTGGTGCAGGTCGGGAAC 	3


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Arabidopsis thaliana GSM304283 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	3
---------------------TCGCTTGGTGCAGGTCGGGAACC 	4
---------------------TCGCTTGGTGCAGGTCGGGAAC 	51
---------------------TCGCTTGGTGCAGGTCGGGAA 	5254
---------------------TCGCTTGGTGCAGGTCGGGA 	40
---------------------TCGCTTGGTGCAGGTCGGG 	3
----------------------CGCTTGGTGCAGGTCGGGAACCA 	1
----------------------CGCTTGGTGCAGGTCGGGAAC 	2
----------------------CGCTTGGTGCAGGTCGGGAA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	26
------------------------CTTGGTGCAGGTCGGGAACCA 	2
------------------------CTTGGTGCAGGTCGGGAAC 	1
---------------------------------------------------------------------------------------------------ATTGGATCCCGCCTTGCATCAA 	2
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	1
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	3
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAA 	29
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGA 	111
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTG 	2
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACT 	2
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	6
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	1
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	10
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	3
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	2


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Arabidopsis thaliana GSM304283 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	51
---------------------TCGCTTGGTGCAGGTCGGGAA 	5254
---------------------TCGCTTGGTGCAGGTCGGGA 	40
---------------------TCGCTTGGTGCAGGTCGGG 	3
----------------------CGCTTGGTGCAGGTCGGGAAC 	2
----------------------CGCTTGGTGCAGGTCGGGAA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	26
------------------------CTTGGTGCAGGTCGGGAAC 	1


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Arabidopsis thaliana GSM304285 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	7
---------------------TCGCTTGGTGCAGGTCGGGAACC 	10
---------------------TCGCTTGGTGCAGGTCGGGAAC 	85
---------------------TCGCTTGGTGCAGGTCGGGAA 	512
---------------------TCGCTTGGTGCAGGTCGGGA 	22
---------------------TCGCTTGGTGCAGGTCGGG 	8
----------------------CGCTTGGTGCAGGTCGGGAACC 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	2
------------------------CTTGGTGCAGGTCGGGAACCA 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	2
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	1
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	1
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	2
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	1


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Arabidopsis thaliana GSM304285 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGAAC 	85
---------------------TCGCTTGGTGCAGGTCGGGAA 	512
---------------------TCGCTTGGTGCAGGTCGGGA 	22
---------------------TCGCTTGGTGCAGGTCGGG 	8
-----------------------GCTTGGTGCAGGTCGGGAA 	2


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Arabidopsis thaliana GSM518432-13544 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
-----------------GGATTCGCTTGGTGCAGGTCG 	1
-----------------GGATTCGCTTGGTGCAGGTCGGGA 	1
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	4
--------------------TTCGCTTGGTGCAGGTCGGGAA 	2
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	6156
---------------------TCGCTTGGTGCAGGTCGGGAA 	44029
---------------------TCGCTTGGTGCAGGTCGGGA 	134
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	127
---------------------TCGCTTGGTGCAGGTCGGGAACC 	119
---------------------TCGCTTGGTGCAGGTCGGG 	30
----------------------CGCTTGGTGCAGGTCGGGAA 	68
----------------------CGCTTGGTGCAGGTCGGGAACC 	24
----------------------CGCTTGGTGCAGGTCGGGAAC 	243
----------------------CGCTTGGTGCAGGTCGGGAACCA 	37
----------------------CGCTTGGTGCAGGTCGGGAACCAA 	2
-----------------------GCTTGGTGCAGGTCGGGAA 	259
-----------------------GCTTGGTGCAGGTCGGGAAC 	29
-----------------------GCTTGGTGCAGGTCGGGAACCA 	3
-----------------------GCTTGGTGCAGGTCGGGAACCAA 	1
-----------------------GCTTGGTGCAGGTCGGGAACC 	1
------------------------CTTGGTGCAGGTCGGGAAC 	4
------------------------CTTGGTGCAGGTCGGGAACCA 	141
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	16
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	1
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	6
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	14
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGA 	3
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAA 	4
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGA 	2
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	5
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAA 	6
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGA 	1
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	17
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	28
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	8
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	745
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAATC 	1
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	6
--------------------------------------------------------------------------------------------------------------CCTTGCATCAACTGAATCGGA 	1


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Arabidopsis thaliana GSM518432-13544 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
-------------TCTCGGATTCGCTTGGTGCAGGTC 	20
-----------------GGATTCGCTTGGTGCAGGTCG 	1
-----------------GGATTCGCTTGGTGCAGGTCGGGA 	1
-------------------ATTCGCTTGGTGCAGGTCGGGAAC 	4
--------------------TTCGCTTGGTGCAGGTCGGGAA 	2
--------------------TTCGCTTGGTGCAGGTCGGGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAAC 	6156
---------------------TCGCTTGGTGCAGGTCGGGAA 	44029
---------------------TCGCTTGGTGCAGGTCGGGA 	134
---------------------TCGCTTGGTGCAGGTCGGGAACTGA 	1
---------------------TCGCTTGGTGCAGGTCGGGAACTG 	1
---------------------TCGCTTGGTGCAGGTCGGGAACT 	14
---------------------TCGCTTGGTGCAGGTCGGG 	30
----------------------CGCTTGGTGCAGGTCGGGAACT 	8
----------------------CGCTTGGTGCAGGTCGGGAA 	68
----------------------CGCTTGGTGCAGGTCGGGAAC 	243
-----------------------GCTTGGTGCAGGTCGGGAA 	259
-----------------------GCTTGGTGCAGGTCGGGAAC 	29
-----------------------GCTTGGTGCAGGTCGGGAACT 	1
------------------------CTTGGTGCAGGTCGGGAAC 	4
--------------------------TGGTGCAGGTCGGGAACTGATTGG 	1
---------------------------GGTGCAGGTCGGGAACTGATTGG 	1
--------------------------------------------------------------------TTGTCATGGTTGGTTTGTGAGC 	1
-----------------------------------------------------------------------------------------CTCCCGTCTTGTATCAACTGAAT 	2
------------------------------------------------------------------------------------------TCCCGTCTTGTATCAACTG 	1
------------------------------------------------------------------------------------------TCCCGTCTTGTATCAACTGAAT 	74
------------------------------------------------------------------------------------------TCCCGTCTTGTATCAACTGAA 	3
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAA 	1
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGAAT 	142
-------------------------------------------------------------------------------------------CCCGTCTTGTATCAACTGA 	1


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Arabidopsis thaliana GSM277608 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

GTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAA
--------------------TTCGCTTGGTGCAGGTCGGGAACC 	1
---------------------TCGCTTGGTGCAGGTCGGGA 	35
---------------------TCGCTTGGTGCAGGTCGGGAACCA 	15
---------------------TCGCTTGGTGCAGGTCGGGAACC 	38
---------------------TCGCTTGGTGCAGGTCGGGAA 	4633
----------------------CGCTTGGTGCAGGTCGGGAACCA 	3
----------------------CGCTTGGTGCAGGTCGGGAAC 	30
----------------------CGCTTGGTGCAGGTCGGGAACC 	12
-----------------------GCTTGGTGCAGGTCGGGAAC 	2
-----------------------GCTTGGTGCAGGTCGGGAACCAA 	1
-----------------------GCTTGGTGCAGGTCGGGAA 	27
-----------------------GCTTGGTGCAGGTCGGGAACC 	1
------------------------CTTGGTGCAGGTCGGGAACCA 	6
--------------------------TGGTGCAGGTCGGGAACCAAT 	7
---------------------------GGTGCAGGTCGGGAACCAAT 	1
-----------------------------TGCAGGTCGGGAACCAATTCGGC 	1
----------------------------------------------------------------------------------------------------TTGGATCCCGCCTTGCATCAA 	3
-----------------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAACT 	4
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	19
-------------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAA 	10
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGA 	1
--------------------------------------------------------------------------------------------------------ATCCCGCCTTGCATCAACTGAAT 	3
---------------------------------------------------------------------------------------------------------TCCCGCCTTGCATCAACTGAAT 	48
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	3
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	5
----------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	457
-----------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	10
--------------------------------------------------------------------------------------------------------------CCTTGCATCAACTGAATCGGA 	3


Overlaps with: MNEST003269
Overlaps with miRBase pre-miRNAs: ath-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Arabidopsis thaliana GSM277608 TCGCTTGGTGCAGGTCGGGAA CCCGTCTTGTATCAACTGAAT up 3 0


Secondary structure

AAGTTACCGGCGGTCTCGGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACCGACACGTGTCTTGTCATGGTTGGTTTGTGAGCTCCCGTCTTGTATCAACTGAATCGGAGTCCGAGGTGAAAA
---------------------TCGCTTGGTGCAGGTCGGGA 	35
---------------------TCGCTTGGTGCAGGTCGGGAA 	4633
----------------------CGCTTGGTGCAGGTCGGGAAC 	30
-----------------------GCTTGGTGCAGGTCGGGAAC 	2
-----------------------GCTTGGTGCAGGTCGGGAA 	27


Overlaps with: MNEST040044 MNEST046958
Overlaps with miRBase pre-miRNAs: ath-MIR168b
HuntMi prediction: true miRNA