miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGCTTGGTGCAGGTCGGGAA

selected species: Glycine max



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

CCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAGCGGTCGCCGGCGCCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAACC
---------------------TCGCTTGGTGCAGGTCGGGAAC 	36
---------------------TCGCTTGGTGCAGGTCGGGAA 	11344
---------------------TCGCTTGGTGCAGGTCGGGA 	155
---------------------TCGCTTGGTGCAGGTCGGG 	10
----------------------CGCTTGGTGCAGGTCGGGAAC 	22
----------------------CGCTTGGTGCAGGTCGGGAA 	495
-----------------------GCTTGGTGCAGGTCGGGAA 	93
--------------------------TGGTGCAGGTCGGGAACCGGTT 	45
--------------------------TGGTGCAGGTCGGGAACCGGT 	110
--------------------------TGGTGCAGGTCGGGAACCGG 	12
---------------------------GGTGCAGGTCGGGAACCGGTT 	10
------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	233


Overlaps with: MNEST003554
Overlaps with miRBase pre-miRNAs: gma-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM543396 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

ATTCTCTCTCTCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAACGGTCGCCGGCGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCTTTGCCTCGT
-------------------------------TCGCTTGGTGCAGGTCGGGAAC 	36
-------------------------------TCGCTTGGTGCAGGTCGGGAA 	11344
-------------------------------TCGCTTGGTGCAGGTCGGGA 	155
-------------------------------TCGCTTGGTGCAGGTCGGG 	10
--------------------------------CGCTTGGTGCAGGTCGGGAAC 	22
--------------------------------CGCTTGGTGCAGGTCGGGAA 	495
---------------------------------GCTTGGTGCAGGTCGGGAA 	93
------------------------------------TGGTGCAGGTCGGGAACCGGTT 	45
------------------------------------TGGTGCAGGTCGGGAACCGGT 	110
------------------------------------TGGTGCAGGTCGGGAACCGG 	12
-------------------------------------GGTGCAGGTCGGGAACCGGTT 	10
----------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	233



Overlaps with miRBase pre-miRNAs: gma-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

CCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAGCGGTCGCCGGCGCCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAACC
------------------AATTCGCTTGGTGCAGGTCGGG 	6
---------------------TCGCTTGGTGCAGGTCGGGAAC 	18
---------------------TCGCTTGGTGCAGGTCGGGAA 	9733
---------------------TCGCTTGGTGCAGGTCGGGA 	69
----------------------CGCTTGGTGCAGGTCGGGAAC 	19
----------------------CGCTTGGTGCAGGTCGGGAA 	367
-----------------------GCTTGGTGCAGGTCGGGAA 	45
--------------------------TGGTGCAGGTCGGGAACCGGTT 	16
--------------------------TGGTGCAGGTCGGGAACCGGT 	67
--------------------------TGGTGCAGGTCGGGAACCGG 	8
---------------------------GGTGCAGGTCGGGAACCGGTT 	6
-------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	17
------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	192
-------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	5


Overlaps with: MNEST003554
Overlaps with miRBase pre-miRNAs: gma-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543394 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

ATTCTCTCTCTCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAACGGTCGCCGGCGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCTTTGCCTCGT
----------------------------AATTCGCTTGGTGCAGGTCGGG 	6
-------------------------------TCGCTTGGTGCAGGTCGGGAAC 	18
-------------------------------TCGCTTGGTGCAGGTCGGGAA 	9733
-------------------------------TCGCTTGGTGCAGGTCGGGA 	69
--------------------------------CGCTTGGTGCAGGTCGGGAAC 	19
--------------------------------CGCTTGGTGCAGGTCGGGAA 	367
---------------------------------GCTTGGTGCAGGTCGGGAA 	45
------------------------------------TGGTGCAGGTCGGGAACCGGTT 	16
------------------------------------TGGTGCAGGTCGGGAACCGGT 	67
------------------------------------TGGTGCAGGTCGGGAACCGG 	8
-------------------------------------GGTGCAGGTCGGGAACCGGTT 	6
-----------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	17
----------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	192
-----------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	5



Overlaps with miRBase pre-miRNAs: gma-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543393 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

CCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAGCGGTCGCCGGCGCCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAACC
---------------------TCGCTTGGTGCAGGTCGGGAACCG 	11
---------------------TCGCTTGGTGCAGGTCGGGAAC 	22
---------------------TCGCTTGGTGCAGGTCGGGAA 	10694
---------------------TCGCTTGGTGCAGGTCGGGA 	98
---------------------TCGCTTGGTGCAGGTCGGG 	10
----------------------CGCTTGGTGCAGGTCGGGAAC 	21
----------------------CGCTTGGTGCAGGTCGGGAA 	477
----------------------CGCTTGGTGCAGGTCGGGA 	5
-----------------------GCTTGGTGCAGGTCGGGAA 	61
--------------------------TGGTGCAGGTCGGGAACCGGTT 	27
--------------------------TGGTGCAGGTCGGGAACCGGT 	126
--------------------------TGGTGCAGGTCGGGAACCGG 	12
---------------------------GGTGCAGGTCGGGAACCGGTT 	6
-------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	14
------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	119


Overlaps with: MNEST003554
Overlaps with miRBase pre-miRNAs: gma-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543393 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

ATTCTCTCTCTCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAACGGTCGCCGGCGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCTTTGCCTCGT
-------------------------------TCGCTTGGTGCAGGTCGGGAACCG 	11
-------------------------------TCGCTTGGTGCAGGTCGGGAAC 	22
-------------------------------TCGCTTGGTGCAGGTCGGGAA 	10694
-------------------------------TCGCTTGGTGCAGGTCGGGA 	98
-------------------------------TCGCTTGGTGCAGGTCGGG 	10
--------------------------------CGCTTGGTGCAGGTCGGGAAC 	21
--------------------------------CGCTTGGTGCAGGTCGGGAA 	477
--------------------------------CGCTTGGTGCAGGTCGGGA 	5
---------------------------------GCTTGGTGCAGGTCGGGAA 	61
------------------------------------TGGTGCAGGTCGGGAACCGGTT 	27
------------------------------------TGGTGCAGGTCGGGAACCGGT 	126
------------------------------------TGGTGCAGGTCGGGAACCGG 	12
-------------------------------------GGTGCAGGTCGGGAACCGGTT 	6
-----------------------------------------------------------------------------------------------TGGATCCCGCCTTGCATCAAC 	14
----------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	119



Overlaps with miRBase pre-miRNAs: gma-MIR168b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM543395 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

CCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAGCGGTCGCCGGCGCCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAACC
---------------------TCGCTTGGTGCAGGTCGGGAA 	3444
---------------------TCGCTTGGTGCAGGTCGGGA 	7
----------------------CGCTTGGTGCAGGTCGGGAA 	53
-----------------------GCTTGGTGCAGGTCGGGAA 	17
--------------------------TGGTGCAGGTCGGGAACCGGT 	8
------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	43


Overlaps with: MNEST003554
Overlaps with miRBase pre-miRNAs: gma-MIR168a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM543395 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

ATTCTCTCTCTCTCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAACGGTCGCCGGCGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCTTTGCCTCGT
-------------------------------TCGCTTGGTGCAGGTCGGGAA 	3444
-------------------------------TCGCTTGGTGCAGGTCGGGA 	7
--------------------------------CGCTTGGTGCAGGTCGGGAA 	53
---------------------------------GCTTGGTGCAGGTCGGGAA 	17
------------------------------------TGGTGCAGGTCGGGAACCGGT 	8
----------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	43



Overlaps with miRBase pre-miRNAs: gma-MIR168b
HuntMi prediction: true miRNA