miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGCTTGGTGCAGGTCGGGAA

selected species: Vitis vinifera



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

TGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACG
--------AATTCGCTTGGTGCAGGTCGG 	1
-----------TCGCTTGGTGCAGGTCGGGAAC 	40
-----------TCGCTTGGTGCAGGTCGGGAA 	1090
-----------TCGCTTGGTGCAGGTCGGGA 	19
-----------TCGCTTGGTGCAGGTCGGG 	1
------------CGCTTGGTGCAGGTCGGGAAC 	2
------------CGCTTGGTGCAGGTCGGGAA 	15
-------------GCTTGGTGCAGGTCGGGAA 	7
-----------------------------------------------------------------------------------TTGCTGAGCGAATTCCGAT 	1
---------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	3
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	710
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	6
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	1
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAATC 	1
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	6
--------------------------------------------------------------------------------------------------------CGCCTTGCATCAACTGAAT 	1


Overlaps with: MNEST008311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458930-2718 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

TGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACG
--------AATTCGCTTGGTGCAGGTCGGG 	1
----------TTCGCTTGGTGCAGGTCGGGAA 	1
-----------TCGCTTGGTGCAGGTCGGGAACCG 	1
-----------TCGCTTGGTGCAGGTCGGGAACC 	1
-----------TCGCTTGGTGCAGGTCGGGAAC 	226
-----------TCGCTTGGTGCAGGTCGGGAA 	7258
-----------TCGCTTGGTGCAGGTCGGGA 	160
-----------TCGCTTGGTGCAGGTCGGG 	9
------------CGCTTGGTGCAGGTCGGGAA 	41
------------CGCTTGGTGCAGGTCGGGA 	3
-------------GCTTGGTGCAGGTCGGGAAC 	3
-------------GCTTGGTGCAGGTCGGGAA 	35
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAATC 	1
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	1517
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	29
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAATC 	2
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	15
--------------------------------------------------------------------------------------------------------CGCCTTGCATCAACTGAAT 	2


Overlaps with: MNEST008311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

TGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACG
--------AATTCGCTTGGTGCAGGTCGG 	1
-----------TCGCTTGGTGCAGGTCGGGAACCG 	1
-----------TCGCTTGGTGCAGGTCGGGAAC 	100
-----------TCGCTTGGTGCAGGTCGGGAA 	2334
-----------TCGCTTGGTGCAGGTCGGGA 	67
-----------TCGCTTGGTGCAGGTCGGG 	1
------------CGCTTGGTGCAGGTCGGGAAC 	1
------------CGCTTGGTGCAGGTCGGGAA 	22
------------CGCTTGGTGCAGGTCGGGA 	1
-------------GCTTGGTGCAGGTCGGGAAC 	1
-------------GCTTGGTGCAGGTCGGGAA 	18
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	1069
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	24
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAATC 	1
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	15
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAA 	1
--------------------------------------------------------------------------------------------------------CGCCTTGCATCAACTGAATCGG 	1
--------------------------------------------------------------------------------------------------------CGCCTTGCATCAACTGAAT 	1


Overlaps with: MNEST008311
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458928-2716 TCGCTTGGTGCAGGTCGGGAA CCCGCCTTGCATCAACTGAAT up 3 0


Secondary structure

TGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACG
-----------TCGCTTGGTGCAGGTCGGGAACCG 	1
-----------TCGCTTGGTGCAGGTCGGGAAC 	132
-----------TCGCTTGGTGCAGGTCGGGAA 	3124
-----------TCGCTTGGTGCAGGTCGGGA 	62
-----------TCGCTTGGTGCAGGTCGGG 	1
------------CGCTTGGTGCAGGTCGGGAA 	32
-------------GCTTGGTGCAGGTCGGGAA 	24
--------------CTTGGTGCAGGTCGGGAACCG 	1
---------------------------------------------------------------------------------------------------GATCCCGCCTTGCATCAACTGAAT 	1
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	868
------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	15
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAATC 	2
-------------------------------------------------------------------------------------------------------CCGCCTTGCATCAACTGAAT 	21
--------------------------------------------------------------------------------------------------------CGCCTTGCATCAACTGAAT 	2


Overlaps with: MNEST008311
HuntMi prediction: true miRNA