miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCGCTTGGTGCAGGTCGGGAC

selected species: Solanum lycopersicum



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TCGCTTGGTGCAGGTCGGGAC CCTGCCTTGCATCAACTGAAT up 2 0


Secondary structure

TGCCCTTTGTTCAGTTCAACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCTACTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAAGATTTTGGATTGATTTA
----------------------------------------TTCGCTTGGTGCAGGTCGGGACC 	1
----------------------------------------TTCGCTTGGTGCAGGTCGGGAC 	2
-----------------------------------------TCGCTTGGTGCAGGTCGGGACCTCA 	1
-----------------------------------------TCGCTTGGTGCAGGTCGGGACCTC 	1
-----------------------------------------TCGCTTGGTGCAGGTCGGGACCT 	47
-----------------------------------------TCGCTTGGTGCAGGTCGGGACC 	639
-----------------------------------------TCGCTTGGTGCAGGTCGGGAC 	5764
-----------------------------------------TCGCTTGGTGCAGGTCGGGA 	288
-----------------------------------------TCGCTTGGTGCAGGTCGGG 	21
------------------------------------------CGCTTGGTGCAGGTCGGGACCT 	3
------------------------------------------CGCTTGGTGCAGGTCGGGACC 	23
------------------------------------------CGCTTGGTGCAGGTCGGGAC 	45
------------------------------------------CGCTTGGTGCAGGTCGGGA 	1
-------------------------------------------GCTTGGTGCAGGTCGGGACCT 	1
-------------------------------------------GCTTGGTGCAGGTCGGGACC 	1
-------------------------------------------GCTTGGTGCAGGTCGGGAC 	2
--------------------------------------------CTTGGTGCAGGTCGGGACCT 	2
--------------------------------------------CTTGGTGCAGGTCGGGACC 	7
----------------------------------------------TGGTGCAGGTCGGGACCTCA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTTGCATCAACTGAAT 	3


Overlaps with: MNEST002647
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 TCGCTTGGTGCAGGTCGGGAC CCCGCCTTGCATCAACTGAAT up 2 0


Secondary structure

TGTGTTGCGGTGGTTTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCGTACCGGTAAAAAAGAATCTTATTTTTACATGTTGTTGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAATT
--------------------TTCGCTTGGTGCAGGTCGGGACC 	1
--------------------TTCGCTTGGTGCAGGTCGGGAC 	2
---------------------TCGCTTGGTGCAGGTCGGGACCTA 	52
---------------------TCGCTTGGTGCAGGTCGGGACCT 	47
---------------------TCGCTTGGTGCAGGTCGGGACC 	639
---------------------TCGCTTGGTGCAGGTCGGGAC 	5764
---------------------TCGCTTGGTGCAGGTCGGGA 	288
---------------------TCGCTTGGTGCAGGTCGGG 	21
----------------------CGCTTGGTGCAGGTCGGGACCTA 	2
----------------------CGCTTGGTGCAGGTCGGGACCT 	3
----------------------CGCTTGGTGCAGGTCGGGACC 	23
----------------------CGCTTGGTGCAGGTCGGGAC 	45
----------------------CGCTTGGTGCAGGTCGGGA 	1
-----------------------GCTTGGTGCAGGTCGGGACCTA 	1
-----------------------GCTTGGTGCAGGTCGGGACCT 	1
-----------------------GCTTGGTGCAGGTCGGGACC 	1
-----------------------GCTTGGTGCAGGTCGGGAC 	2
------------------------CTTGGTGCAGGTCGGGACCTA 	5
------------------------CTTGGTGCAGGTCGGGACCT 	2
------------------------CTTGGTGCAGGTCGGGACC 	7
-------------------------TTGGTGCAGGTCGGGACCTAC 	2
-------------------------TTGGTGCAGGTCGGGACCTA 	1
--------------------------TGGTGCAGGTCGGGACCTACC 	3
--------------------------TGGTGCAGGTCGGGACCTAC 	4
----------------------------------------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	16



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304986 TCGCTTGGTGCAGGTCGGGAC CCTGCCTTGCATCAACTGAAT up 2 0


Secondary structure

TGCCCTTTGTTCAGTTCAACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCTACTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAAGATTTTGGATTGATTTA
----------------------------------------TTCGCTTGGTGCAGGTCGGGACC 	1
----------------------------------------TTCGCTTGGTGCAGGTCGGGAC 	1
----------------------------------------TTCGCTTGGTGCAGGTCGGGA 	2
-----------------------------------------TCGCTTGGTGCAGGTCGGGACCTC 	1
-----------------------------------------TCGCTTGGTGCAGGTCGGGACCT 	13
-----------------------------------------TCGCTTGGTGCAGGTCGGGACC 	991
-----------------------------------------TCGCTTGGTGCAGGTCGGGAC 	7795
-----------------------------------------TCGCTTGGTGCAGGTCGGGA 	353
-----------------------------------------TCGCTTGGTGCAGGTCGGG 	29
------------------------------------------CGCTTGGTGCAGGTCGGGACCT 	1
------------------------------------------CGCTTGGTGCAGGTCGGGACC 	18
------------------------------------------CGCTTGGTGCAGGTCGGGAC 	39
------------------------------------------CGCTTGGTGCAGGTCGGGA 	4
-------------------------------------------GCTTGGTGCAGGTCGGGACC 	4
-------------------------------------------GCTTGGTGCAGGTCGGGAC 	7
---------------------------------------------TTGGTGCAGGTCGGGACCT 	1
----------------------------------------------TGGTGCAGGTCGGGACCTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTTGCATCAACTGAATT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTTGCATCAACTGAAT 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTTGCATCAACTGAA 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCCTTGCATCAACTGA 	2


Overlaps with: MNEST002647
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304986 TCGCTTGGTGCAGGTCGGGAC CCCGCCTTGCATCAACTGAAT up 2 0


Secondary structure

TGTGTTGCGGTGGTTTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCGTACCGGTAAAAAAGAATCTTATTTTTACATGTTGTTGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAATT
--------------------TTCGCTTGGTGCAGGTCGGGACC 	1
--------------------TTCGCTTGGTGCAGGTCGGGAC 	1
--------------------TTCGCTTGGTGCAGGTCGGGA 	2
---------------------TCGCTTGGTGCAGGTCGGGACCTA 	8
---------------------TCGCTTGGTGCAGGTCGGGACCT 	13
---------------------TCGCTTGGTGCAGGTCGGGACC 	991
---------------------TCGCTTGGTGCAGGTCGGGAC 	7795
---------------------TCGCTTGGTGCAGGTCGGGA 	353
---------------------TCGCTTGGTGCAGGTCGGG 	29
----------------------CGCTTGGTGCAGGTCGGGACCTA 	1
----------------------CGCTTGGTGCAGGTCGGGACCT 	1
----------------------CGCTTGGTGCAGGTCGGGACC 	18
----------------------CGCTTGGTGCAGGTCGGGAC 	39
----------------------CGCTTGGTGCAGGTCGGGA 	4
-----------------------GCTTGGTGCAGGTCGGGACC 	4
-----------------------GCTTGGTGCAGGTCGGGAC 	7
------------------------CTTGGTGCAGGTCGGGACCTA 	10
-------------------------TTGGTGCAGGTCGGGACCTACC 	2
-------------------------TTGGTGCAGGTCGGGACCTAC 	1
-------------------------TTGGTGCAGGTCGGGACCTA 	1
-------------------------TTGGTGCAGGTCGGGACCT 	1
--------------------------TGGTGCAGGTCGGGACCTACC 	7
----------------------------------------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAAT 	11
----------------------------------------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGAA 	3
----------------------------------------------------------------------------------------------------------------------------------------CCCGCCTTGCATCAACTGA 	1



HuntMi prediction: true miRNA