miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCATCATTCCTT

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCGGACCAGGCATCATTCCTT GGAATGTGGCATGGCTCGATG down 4 0


Secondary structure

CCGAGAACAGAGATTGTGTAGCTCAGCTGTAAGGAATGTGGCATGGCTCGATGCTGTTTGAGCATGTCAAGTTCAGCCTCGGACCAGGCATCATTCCTTTCATCTCAGTTACACATTTGACATCCAGG
------------------------------------------------------------------------------TCGGACCAGGCATCATTCCTT 	13

Overlaps with: MNEST039476 MNEST051380
Overlaps with miRBase pre-miRNAs: ppt-MIR166m
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313215 TCGGACCAGGCATCATTCCTT GGAATGTGGCATGGCTCGATG down 4 0


Secondary structure

CCGAGAACAGAGATTGTGTAGCTCAGCTGTAAGGAATGTGGCATGGCTCGATGCTGTTTGAGCATGTCAAGTTCAGCCTCGGACCAGGCATCATTCCTTTCATCTCAGTTACACATTTGACATCCAGG
-----------------------------------------------------------------------------CTCGGACCAGGCATCATTCCTT 	1
------------------------------------------------------------------------------TCGGACCAGGCATCATTCCTT 	5
------------------------------------------------------------------------------TCGGACCAGGCATCATTCCTTT 	1

Overlaps with: MNEST039476 MNEST051380
Overlaps with miRBase pre-miRNAs: ppt-MIR166m
HuntMi prediction: true miRNA