miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCAATCCCT

selected species: Oryza sativa



23 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
-------------------------------GGGATTGTTGTCTGGTTCAAG 	1
---------------------------------GATTGTTGTCTGGTTCAAGGTC 	1
---------------------------------GATTGTTGTCTGGTTCAAGG 	1
-----------------------------------TTGTTGTCTGGTTCAAGGTCT 	1
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATCCCT 	2
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATC 	2
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	79
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCC 	6
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATC 	2
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCCTT 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCCT 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	5
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	3088
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	100
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	84
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	16
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	2
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	15
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCTT 	7
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	12

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
--------------------GGGGTTTGTTGTCTGGCTCGAGGC 	1
----------------------GGTTTGTTGTCTGGCTCGAG 	1
----------------------GGTTTGTTGTCTGGCTCGAGG 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	5
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	3088
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	100
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	84
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	16
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	2
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	15
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCTT 	7
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	12

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
-------------------AGTTAGGTTAAGGGGATTGTTG 	1
--------------------------------GGATTGTTGTCTGGTTCAAGG 	1
---------------------------------GATTGTTGTCTGGTTCAAGGT 	2
--------------------------------------------------------------------------------------------------TGGTGATCTCGGACCAGGCTT 	1
------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCAATCCC 	2
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATCCCT 	2
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	8
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCC 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	3
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	739
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	22
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	6
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTTA 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	1
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	25
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	7

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGG 	11
----------------------GGTTTGTTGTCTGGCTCGAGGCAT 	1
----------------------GGTTTGTTGTCTGGCTCGAGGC 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	3
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	739
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	22
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	6
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTTA 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	1
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	25
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	7

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
---------------------------------GATTGTTGTCTGGTTCAAGG 	1
---------------------------------GATTGTTGTCTGGTTCAAGGTC 	1
-----------------------------------TTGTTGTCTGGTTCAAGGTCT 	16
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	2
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	11
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	341
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	3

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGGC 	1
----------------------GGTTTGTTGTCTGGCTCGAGG 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	2
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	11
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	341
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	3

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	7
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	88
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	2
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	5
------------------------------------------------------------------------------------------------------------------------AATCCCTTTAACCAGCATC 	1

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	88
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	2
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	5

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
-------------------------------GGGATTGTTGTCTGGTTCAAGGTC 	1
---------------------------------GATTGTTGTCTGGTTCAAGGTCTC 	3
-----------------------------------TTGTTGTCTGGTTCAAGGTCT 	9
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATCCCT 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	6
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	268
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	1

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGGC 	1
----------------------GGTTTGTTGTCTGGCTCGAGG 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	6
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	268
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	1

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
-------------------AGTTAGGTTAAGGGGATTGTTG 	1
-------------------AGTTAGGTTAAGGGGATTG 	1
--------------------------------GGATTGTTGTCTGGTTCAAGG 	1
---------------------------------GATTGTTGTCTGGTTCAAGGTC 	2
---------------------------------GATTGTTGTCTGGTTCAAGG 	1
------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCAATCCC 	1
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATCCCT 	1
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATC 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	4
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	717
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	18
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	12
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	1
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	23
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	8

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGG 	5
----------------------GGTTTGTTGTCTGGCTCGAG 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	4
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	717
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	18
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	12
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	1
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	23
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	8

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
---------TCCAGGCTGAAGTTAGGTTAA 	1
--------------------------------GGATTGTTGTCTGGTTCAAGG 	1
---------------------------------GATTGTTGTCTGGTTCAAGGTC 	1
---------------------------------GATTGTTGTCTGGTTCAAGGT 	1
-----------------------------------TTGTTGTCTGGTTCAAGGTCT 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	12
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	317
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	14
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	6
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCTT 	2
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	3
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCTT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	7

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	317
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	14
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	6
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCTT 	2
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	3
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCTT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	7

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
---------------------------------GATTGTTGTCTGGTTCAAGGTCTC 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	10

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	10

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGG 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	6

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
---------------------------------GATTGTTGTCTGGTTCAAGGTCTC 	1
-----------------------------------TTGTTGTCTGGTTCAAGGTCT 	5
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	6
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	104
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	2

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM520637-18674 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGG 	1
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	6
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	104
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	1
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	2

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM693279 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
-------------------------------GGGATTGTTGTCTGGTTCAAG 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	26
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCCT 	1
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCC 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	1768
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	69
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	67
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	5
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	8
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCTT 	2
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	11

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM693279 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGG 	3
----------------------GGTTTGTTGTCTGGCTCGAG 	2
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCCT 	3
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	1768
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	69
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	67
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	5
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCT 	8
-----------------------------------------------------------------------------------------------------------CGGACCAGGCTTCAATCCCTT 	2
------------------------------------------------------------------------------------------------------------GGACCAGGCTTCAATCCCT 	11

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCAATCCCT GGATTGTTGTCTGGTTCAAGG down 3 0


Secondary structure

CATGGCATGTCCAGGCTGAAGTTAGGTTAAGGGGATTGTTGTCTGGTTCAAGGTCTCCACATTGTGCAAAATGTTCATTCATGGAGGCACAGGATGCTTGGTGATCTCGGACCAGGCTTCAATCCCTTTAACCAGCATCTGCACAATATGTCTCTC
---------------------------------GATTGTTGTCTGGTTCAAGGTCTC 	3
---------------------------------GATTGTTGTCTGGTTCAAGGTC 	1
-----------------------------------TTGTTGTCTGGTTCAAGGTCT 	9
------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCAATCCC 	9
-------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCAATCCCT 	2
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCCC 	13
--------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCAATCC 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	2
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	8
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	9
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	432
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	3

Overlaps with: MNEST004542
Overlaps with miRBase pre-miRNAs: osa-MIR166l
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM520639-18678 TCGGACCAGGCTTCAATCCCT GGTTTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

ATTTGCTTGGATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGGACCAGGCTTCAATCCCTTTAACCATGCGGCATATTG
----------------------GGTTTGTTGTCTGGCTCGAGGC 	1
---------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCAATCCC 	4
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTTT 	2
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCC 	8
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCC 	9
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCT 	432
----------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCAATCCCTT 	3

Overlaps with: MNEST041947 MNEST048854
Overlaps with miRBase pre-miRNAs: osa-MIR166k
HuntMi prediction: true miRNA