miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Brachypodium distachyon



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

GGGGAGCTTTTTTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCTGAGATCGAGAGAACTTGAAATTCGATCTCTAGATTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCGTGT
-------------------AGGGGAATGTTGTCTGGCTC 	1
-----------------------GAATGTTGTCTGGCTCGAGGT 	1
-------------------------ATGTTGTCTGGCTCGAGGTGC 	1
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	73
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	2
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	5
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	18
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2619
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	152
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	148
---------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13


Overlaps with: MNEST041747
Overlaps with miRBase pre-miRNAs: bdi-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

TGAAGCTATTTTGCTTCTGGGTGGAATGTTGTCTGGTTCAAGGTCTTGCCATGTGATTTGAGGATGAACGGTTTGTGCATGCATAACTTTCATTTCTCTTGTTTGCGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAACT
---------------TCTGGGTGGAATGTTGTCTGGTTC 	1
---------------TCTGGGTGGAATGTTGTCTGG 	1
------------------GGGTGGAATGTTGTCTGGTTC 	2
---------------------TGGAATGTTGTCTGGTTCAAGG 	3
---------------------TGGAATGTTGTCTGGTTCAAG 	12
---------------------TGGAATGTTGTCTGGTTCAA 	2
----------------------GGAATGTTGTCTGGTTCAAGGT 	5
----------------------GGAATGTTGTCTGGTTCAAGG 	1015
----------------------GGAATGTTGTCTGGTTCAAG 	54
----------------------GGAATGTTGTCTGGTTCAA 	72
-----------------------GAATGTTGTCTGGTTCAAGG 	7
------------------------AATGTTGTCTGGTTCAAGG 	3
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	73
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	5
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	18
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2619
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	152
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	148
-----------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
-----------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13


Overlaps with: MNEST041745
Overlaps with miRBase pre-miRNAs: bdi-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TCGGACCAGGCTTCATTCCCC GGCATGTCGTGTGGCCCGAGA down 5 0


Secondary structure

GTCTTGTTGAGGGGCATGTCGTGTGGCCCGAGACCGGTTCATGGCCGTCGATCGGTCGGCTAATGTCGCCGGCGGCGCGCGTCAGTGGATGGTCTCGGACCAGGCTTCATTCCCCCCAACGGCA
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	73
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	5
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2619
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	152
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	148
-----------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506620-12051 TCGGACCAGGCTTCATTCCCC GGAATGACGCCGGGTCTGAAA down 2 0


Secondary structure

CCTCTTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCATTCCCCATGACTCGACCATGGGCAC
-----------------------GAATGACGCCGGGTCTGAAAG 	81
--------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	105
---------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCAT 	1
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCA 	3
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2619
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	152
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	148
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13


Overlaps with: MNEST041743 MNEST048307
Overlaps with miRBase pre-miRNAs: bdi-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Brachypodium distachyon GSM506620-12051 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTGGAGA down 3 0


Secondary structure

GCGCAGTTGAGGGGAATGTTGTCTGGTTGGAGACCTAGCTAGCAGCTAGCACGGATCATCCATAGATCGATTCGACGCTGCATATGCGCGCGGTTTCGGACCAGGCTTCATTCCCCCCAACTCTC
------------GGAATGTTGTCTGGTTGGAGAC 	1
------------GGAATGTTGTCTGGTTGGAGA 	59
-------------GAATGTTGTCTGGTTGGAGAC 	2
--------------AATGTTGTCTGGTTGGAGA 	1
---------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	105
----------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	2
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2619
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	152
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	148
------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
-------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13


Overlaps with: MNEST041746
Overlaps with miRBase pre-miRNAs: bdi-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Brachypodium distachyon GSM506620-12051 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

GGCGAAAAGTTGGCTAGAGAGGGAGCCTTTTTCGTTTTGAGGGGAATGTTGTCTGGCTCGGGGTTCTCTTTATTTCTATGCCTCTCTCTATCCCCCCCTCCTCAATCTCTCTAGCTTTGATTGGATCGAGAGAAGATCGATCGATCGATCCAAGAAGAGTTCTGAGAAGGGGGATGAAGAGAGTAGACGTATGTGTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAATACAAGGGCTCCCATGATCTCTGCCTCCGCCAGG
----------------------------------TTTTGAGGGGAATGTTGTCTG 	1
---------------------------------------AGGGGAATGTTGTCTGGCTC 	1
------------------------------------------GGAATGTTGTCTGGCTCGGGG 	4
-------------------------------------------GAATGTTGTCTGGCTCGGGGT 	1
-------------------------------------------GAATGTTGTCTGGCTCGGGG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	73
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2619
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	152
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	148
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Brachypodium distachyon GSM506621-23192 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

TGAAGCTATTTTGCTTCTGGGTGGAATGTTGTCTGGTTCAAGGTCTTGCCATGTGATTTGAGGATGAACGGTTTGTGCATGCATAACTTTCATTTCTCTTGTTTGCGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAACT
---------------TCTGGGTGGAATGTTGTCTGG 	1
---------------TCTGGGTGGAATGTTGTCTGGTTC 	1
---------------------TGGAATGTTGTCTGGTTCAAG 	1
----------------------GGAATGTTGTCTGGTTCAAGG 	6
-------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	2
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	21
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	917
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
--------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	8
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	17
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	13
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18956
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	208
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	62
----------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	3
-----------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	3
-----------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	123
------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	1
------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	83


Overlaps with: MNEST041745
Overlaps with miRBase pre-miRNAs: bdi-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Brachypodium distachyon GSM506621-23192 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

GGGGAGCTTTTTTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCTGAGATCGAGAGAACTTGAAATTCGATCTCTAGATTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCGTGT
----------------------GGAATGTTGTCTGGCTCGAGG 	3
-----------------------GAATGTTGTCTGGCTCGAGG 	1
-----------------------------------------------------------------------------AGATTGATCTCGGACCAGGCTTC 	2
-----------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	21
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	917
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	2
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCT 	1
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	8
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	17
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	13
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18956
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	208
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	62
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	3
---------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	3
---------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	123
----------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	83


Overlaps with: MNEST041747
Overlaps with miRBase pre-miRNAs: bdi-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Brachypodium distachyon GSM506621-23192 TCGGACCAGGCTTCATTCCCC GGCATGTCGTGTGGCCCGAGA down 5 0


Secondary structure

GTCTTGTTGAGGGGCATGTCGTGTGGCCCGAGACCGGTTCATGGCCGTCGATCGGTCGGCTAATGTCGCCGGCGGCGCGCGTCAGTGGATGGTCTCGGACCAGGCTTCATTCCCCCCAACGGCA
------------GGCATGTCGTGTGGCCCGAGA 	1
---------------------------------------------------------------------------------------GATGGTCTCGGACCAGGCTTCATT 	1
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	21
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	917
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
--------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	8
---------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	17
---------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	13
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	6
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18956
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	208
----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546
-----------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	2
-----------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	123
------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	83



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Brachypodium distachyon GSM506621-23192 TCGGACCAGGCTTCATTCCCC GGAATGACGCCGGGTCTGAAA down 2 0


Secondary structure

CCTCTTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCATTCCCCATGACTCGACCATGGGCAC
-----------------------GAATGACGCCGGGTCTGAAAG 	10
-------------------------------------------------------------------------------------CTTTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	15
---------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	341
---------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	3
---------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	9
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCAT 	2
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18956
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCA 	14
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	208
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	123
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	83


Overlaps with: MNEST041743 MNEST048307
Overlaps with miRBase pre-miRNAs: bdi-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Brachypodium distachyon GSM506621-23192 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

GGCGAAAAGTTGGCTAGAGAGGGAGCCTTTTTCGTTTTGAGGGGAATGTTGTCTGGCTCGGGGTTCTCTTTATTTCTATGCCTCTCTCTATCCCCCCCTCCTCAATCTCTCTAGCTTTGATTGGATCGAGAGAAGATCGATCGATCGATCCAAGAAGAGTTCTGAGAAGGGGGATGAAGAGAGTAGACGTATGTGTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAATACAAGGGCTCCCATGATCTCTGCCTCCGCCAGG
----------------------------------------GGGGAATGTTGTCTGGCTCGG 	2
-----------------------------------------GGGAATGTTGTCTGGCTCGGG 	1
------------------------------------------GGAATGTTGTCTGGCTCGGGG 	27
------------------------------------------GGAATGTTGTCTGGCTCGGGGT 	1
------------------------------------------GGAATGTTGTCTGGCTCGGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	21
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	917
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	17
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	13
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18956
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	208
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	123
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	83



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Brachypodium distachyon GSM506621-23192 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTGGAGA down 3 0


Secondary structure

GCGCAGTTGAGGGGAATGTTGTCTGGTTGGAGACCTAGCTAGCAGCTAGCACGGATCATCCATAGATCGATTCGACGCTGCATATGCGCGCGGTTTCGGACCAGGCTTCATTCCCCCCAACTCTC
------------GGAATGTTGTCTGGTTGGAGA 	45
---------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	15
----------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	341
----------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	3
----------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	9
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	6
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	2
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	18956
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	208
-----------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546
------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	2
------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	123
-------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	83


Overlaps with: MNEST041746
Overlaps with miRBase pre-miRNAs: bdi-MIR166d
HuntMi prediction: true miRNA