miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Oryza sativa



65 records found  

Showing records 1 - 50

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
----------------------------------TTCTGAGTGGAATGTTGTCTG 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAAGG 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	1
---------------------------------------------------------------------------------------------------------------------------TGGGATCTCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	95
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	18
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12704
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	369
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	13
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	48
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	105

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
-----------------------------------GTTGAGAGGAATGTCGTCTGG 	1
--------------------------------------GAGAGGAATGTCGTCTGGCCTGAG 	1
------------------------------------------GGAATGTCGTCTGGCCTGAGA 	2
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	95
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	18
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12704
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	369
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	13
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	48
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	105

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM693280 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	5
-----------------TGAGGGGAATGTTGTCTGGCTC 	4
----------------------GGAATGTTGTCTGGCTCGGGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	95
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	18
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12704
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	369
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	48
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	105


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM693280 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	5
-----------------TGAGGGGAATGTTGTCTGGCTC 	4
----------------------GGAATGTTGTCTGGCTCGAGG 	137
----------------------GGAATGTTGTCTGGCTCGAG 	32
----------------------GGAATGTTGTCTGGCTCGA 	2
----------------------GGAATGTTGTCTGGCTCGAGGT 	2
----------------------GGAATGTTGTCTGGCTCGAGGTGC 	2
------------------------AATGTTGTCTGGCTCGAGGTG 	2
-------------------------ATGTTGTCTGGCTCGAGGTGC 	2
-------------------------------------------------GAGAAACCTCTGATCGATCAG 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	95
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	18
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12704
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	369
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	13
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	48
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	105

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM693280 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
-----------------TGAGGGGAATGTTGTCTGGTC 	2
----------------------GGAATGTTGTCTGGTCCGAGA 	2
-----------------------------------------------------------------------------------------AGGTGGGGGGTTTCGGACCAGGCT 	1
----------------------------------------------------------------------------------------------GGGGGTTTCGGACCAGGCTTCATT 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	9
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	401
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	3
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	2
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12704
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	369
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	48
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	105

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
-----------------------------------------TGGAATGTTGTCTGGTTCAAGGTC 	2
-----------------------------------------TGGAATGTTGTCTGGTTCAA 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	9
------------------------------------------GGAATGTTGTCTGGTTCAAG 	1
---------------------------------------------------------------------------------------------------------------------CATCCGTGGGATCTCGGACCAGGC 	1
--------------------------------------------------------------------------------------------------------------------------GTGGGATCTCGGACCAGGCTTCAT 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	5
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	781
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	14
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	39
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	43
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	21
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	7938
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	143
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	206
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	5
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	97

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	781
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	14
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	39
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	43
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	21
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	7938
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	143
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	206
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	5
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	97

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	1
--------------------GGGGAATGTTGTCTGGCTCGG 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	7
----------------------GGAATGTTGTCTGGCTCGGG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	781
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	14
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	39
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	43
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	7938
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	143
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	7
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	206
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	97


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	13
----------------------GGAATGTTGTCTGGCTCGAGGTGCAT 	1
-----------------------GAATGTTGTCTGGCTCGAGG 	3
------------------------AATGTTGTCTGGCTCGAGGTG 	1
-------------------------ATGTTGTCTGGCTCGAGGTGC 	3
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	5
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	781
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	14
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	39
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	43
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	21
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	7938
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	143
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	206
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	5
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	97

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM571078-22531 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
-----------------TGAGGGGAATGTTGTCTGGTC 	2
----------------------GGAATGTTGTCTGGTCCGAGA 	23
-----------------------GAATGTTGTCTGGTCCGAGA 	2
-----------------------GAATGTTGTCTGGTCCGAGAC 	1
---------------------------------------------------------------------------------------------GGGGGGTTTCGGACCAGGCTT 	1
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTC 	4
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	20
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	711
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	7
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	6
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	3
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	7938
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	143
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	7
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	206
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	5
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	97

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	39
------------------------------------------GGAATGTTGTCTGGTTCAA 	3
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	5
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	451
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	7
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	39
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	3817
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	55
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	28

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	5
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	451
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	7
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	39
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	3817
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	55
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	28

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
---------------TTTGAGGGGAATGTTGTCTGG 	2
-----------------TGAGGGGAATGTTGTCTGGCTC 	21
-----------------TGAGGGGAATGTTGTCTGGCT 	26
-----------------TGAGGGGAATGTTGTCTGGC 	2
--------------------GGGGAATGTTGTCTGGCTCGG 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	26
----------------------GGAATGTTGTCTGGCTCGGG 	1
------------------------AATGTTGTCTGGCTCGGGG 	1
---------------------------------------------------------------------------------------------------------------------------------------AGTCAAAGAGATGAGAGTAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	451
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	39
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	13
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	3817
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	55
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	28
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGGCTTCATTCCCCCCAAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
---------------TTTGAGGGGAATGTTGTCTGG 	2
-----------------TGAGGGGAATGTTGTCTGGCTC 	21
-----------------TGAGGGGAATGTTGTCTGGCT 	26
-----------------TGAGGGGAATGTTGTCTGGC 	2
----------------------GGAATGTTGTCTGGCTCGAGGTGC 	1
----------------------GGAATGTTGTCTGGCTCGA 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	75
-----------------------GAATGTTGTCTGGCTCGAGGT 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	1
-------------------------ATGTTGTCTGGCTCGAGGTGCA 	1
-------------------------ATGTTGTCTGGCTCGAGGTGC 	3
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	5
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	451
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	7
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	39
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	3817
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	55
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	28

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM520638-18676 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCTGG 	1
-----------------TGAGGGGAATGTTGTCTGGTC 	4
----------------------GGAATGTTGTCTGGTCCGAGA 	11
------------------------AATGTTGTCTGGTCCGAGAC 	1
------------------------AATGTTGTCTGGTCCGAGACC 	2
-------------------------ATGTTGTCTGGTCCGAGACC 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	63
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	13
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	3
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	13
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	1509
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	39
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	13
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	3817
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	55
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	28
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCC 	1

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
-----------------------------------TCTGAGTGGAATGTTGTCTGG 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAAG 	2
------------------------------------------------TTGTCTGGTTCAAGGTCTCATGC 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	248
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	11
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	13
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	8
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	8093
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	107
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	143
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	52
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	472

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
------------------------------------------------------------------------------GGGTACACGTGGACGGTCTCGGAC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	248
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	11
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	13
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	8
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	8093
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	107
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	143
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	52
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	472

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-----------------TGAGGGGAATGTTGTCTGGCT 	4
--------------------GGGGAATGTTGTCTGGCTCGG 	3
----------------------GGAATGTTGTCTGGCTCGGGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	248
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	11
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	13
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	8093
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	107
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	143
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	52
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	472


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-----------------TGAGGGGAATGTTGTCTGGCT 	4
----------------------GGAATGTTGTCTGGCTCGAGG 	2
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	248
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	11
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	13
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	8
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	8093
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	107
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	143
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	52
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	472

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM686040-31373 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
--------------AGTTGAGGGGAATGTTGTCT 	1
---------------GTTGAGGGGAATGTTGTCTGG 	1
-----------------TGAGGGGAATGTTGTCTGGTC 	2
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	14
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	8093
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	107
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	143
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	52
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	472

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
-----------------------------------------TGGAATGTTGTCTGGTTCAAG 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAA 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	71
------------------------------------------GGAATGTTGTCTGGTTCAAG 	2
------------------------------------------GGAATGTTGTCTGGTTCAA 	2
--------------------------------------------AATGTTGTCTGGTTCAAGGTCTCA 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	396
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	24
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2747
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	33
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	5
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	396
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	24
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2747
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	33
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	5
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGC 	1
-----------------TGAGGGGAATGTTGTCTGGCTC 	37
-----------------TGAGGGGAATGTTGTCTGGCT 	12
-----------------TGAGGGGAATGTTGTCTGG 	1
-------------------AGGGGAATGTTGTCTGGCTC 	1
----------------------GGAATGTTGTCTGGCTCGGGGC 	2
----------------------GGAATGTTGTCTGGCTCGGGG 	15
------------------------AATGTTGTCTGGCTCGGGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	396
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	24
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	16
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2747
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	33
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGC 	1
-----------------TGAGGGGAATGTTGTCTGGCTC 	37
-----------------TGAGGGGAATGTTGTCTGGCT 	12
-----------------TGAGGGGAATGTTGTCTGG 	1
-------------------AGGGGAATGTTGTCTGGCTC 	1
---------------------GGGAATGTTGTCTGGCTCGAG 	4
---------------------GGGAATGTTGTCTGGCTCGA 	1
----------------------GGAATGTTGTCTGGCTCGAGGTGCA 	1
----------------------GGAATGTTGTCTGGCTCGAGGT 	2
----------------------GGAATGTTGTCTGGCTCGAG 	1
----------------------GGAATGTTGTCTGGCTCGA 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	61
-----------------------GAATGTTGTCTGGCTCGAGGT 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	2
-------------------------ATGTTGTCTGGCTCGAGGTGC 	3
---------------------------------------------------GAAACCTCTGATCGATCAGGT 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	396
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	24
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2747
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	33
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	5
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Oryza sativa GSM520640-18679 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
-----------------TGAGGGGAATGTTGTCTGGTC 	3
-----------------TGAGGGGAATGTTGTCTGG 	1
----------------------GGAATGTTGTCTGGTCCGAG 	1
----------------------GGAATGTTGTCTGGTCCGAGA 	9
-----------------------GAATGTTGTCTGGTCCGAGA 	1
-----------------------GAATGTTGTCTGGTCCGAGAC 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	46
-------------------------ATGTTGTCTGGTCCGAGAC 	2
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	8
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	8
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	5
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	978
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	24
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	16
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	2747
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	33
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	5
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	13

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
-----------------------------------------TGGAATGTTGTCTGGTTCAAGGTC 	2
-----------------------------------------TGGAATGTTGTCTGGTTCAA 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	10
------------------------------------------GGAATGTTGTCTGGTTCAAG 	1
-------------------------------------------------------------------------------------AGGATGATTTGTGCAAGGTTTTT 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	6
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	713
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	17
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	39
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	6268
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	145
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	173
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	67
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	1

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	713
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	17
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	39
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	6268
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	145
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	173
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	67
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	1

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	4
-----------------TGAGGGGAATGTTGTCTGGCTC 	3
------------------GAGGGGAATGTTGTCTGGCTC 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	7
----------------------GGAATGTTGTCTGGCTCGGG 	3
----------------------GGAATGTTGTCTGGCTCGG 	1
-----------------------GAATGTTGTCTGGCTCGGGG 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	713
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	39
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	6268
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	145
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	173
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	67


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	4
-----------------TGAGGGGAATGTTGTCTGGCTC 	3
------------------GAGGGGAATGTTGTCTGGCTC 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	13
----------------------GGAATGTTGTCTGGCTCGAGGT 	1
-----------------------GAATGTTGTCTGGCTCGAGG 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	1
-------------------------ATGTTGTCTGGCTCGAGGTGC 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	6
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	713
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	17
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	39
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	19
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	6268
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	145
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	173
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	67
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	1

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Oryza sativa GSM571077-22529 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
-----------------TGAGGGGAATGTTGTCTGGTC 	3
----------------------GGAATGTTGTCTGGTCCGAGA 	18
----------------------GGAATGTTGTCTGGTCCGA 	1
----------------------GGAATGTTGTCTGGTCCGAG 	1
-----------------------GAATGTTGTCTGGTCCGAGA 	4
-----------------------GAATGTTGTCTGGTCCGAGAC 	2
-------------------------ATGTTGTCTGGTCCGAGAC 	1
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTC 	3
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATT 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	16
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATT 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	604
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	9
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	8
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	6
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	6268
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	145
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	173
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	2
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	67

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAAGGT 	1
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	9
------------------------------------------GGAATGTTGTCTGGTTCAAG 	2
------------------------------------------GGAATGTTGTCTGGTTCAA 	1
-------------------------------------------GAATGTTGTCTGGTTCAAGG 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	179
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	15
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	15
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	179
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	15
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	15
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
-------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
--------------------GGGGAATGTTGTCTGGCTCGG 	1
---------------------GGGAATGTTGTCTGGCTCGG 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	2
----------------------GGAATGTTGTCTGGCTCGGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	179
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	15
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	3
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	179
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	15
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	15
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Oryza sativa GSM686039-31370 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	12
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	2
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	12295
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	169
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	219
------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	664
------------------------------------------------------------------------------------------------------------AGGCTTCATTCCCCCCAACTC 	2

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AGAGATAGCTTCAAAACATTAGAT 	1

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
38 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
39 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGAGGTGCA 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	2
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
40 Oryza sativa GSM520634-18667 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	25
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	5
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	225
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
41 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	1
------------------------------------------GGAATGTTGTCTGGTTCAA 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
42 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
------------------------------------------GGAATGTCGTCTGGCCTGAGA 	1
--------------------------------------------AATGTCGTCTGGCCTGAGATC 	1
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
43 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
44 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-----------------TGAGGGGAATGTTGTCTGGCT 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	4
----------------------GGAATGTTGTCTGGCTCGAGGTGCA 	1
------------------------AATGTTGTCTGGCTCGAGGTG 	2
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
45 Oryza sativa GSM520636-18672 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	66
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	371
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
46 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCAAGG down 4 0


Secondary structure

GGGAAAGGAAAATAGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATGCACCTTGCGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCTATAGTTCTCGC
--------------------------------GCTTCTGAGTGGAATGTTGTCTGG 	1
-----------------------------------------TGGAATGTTGTCTGGTTCAAGGTC 	3
------------------------------------------GGAATGTTGTCTGGTTCAAGGT 	3
------------------------------------------GGAATGTTGTCTGGTTCAAGGTCT 	10
------------------------------------------GGAATGTTGTCTGGTTCAAGG 	47
-----------------------------------------------GTTGTCTGGTTCAAGGTCTCATGC 	2
-----------------------------------------------GTTGTCTGGTTCAAGGTCT 	1
------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	63
-------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
--------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCCT 	3
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041937 MNEST048844
Overlaps with miRBase pre-miRNAs: osa-MIR166a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
47 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTCGTCTGGCCTGAGA down 4 0


Secondary structure

CTCCATTAATTTCAGTTCTTCCCCTCGATCATCTTGTTGAGAGGAATGTCGTCTGGCCTGAGATCGTACCACAGTGGTGGGTACACGTGGACGGTCTCGGACCAGGCTTCATTCCCCTCAACAACTCGTCGGAGTAGAGGAAGAAGACGGACAGTG
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
----------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCCT 	3
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
--------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST041942 MNEST048849
Overlaps with miRBase pre-miRNAs: osa-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
48 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGGGG down 3 0


Secondary structure

AGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGGGCTCCCA
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
-------------------AGGGGAATGTTGTCTGGCTCGGGG 	1
----------------------GGAATGTTGTCTGGCTCGGGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	63
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGGCTTCATTCCCCCCAAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
49 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

AGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATAT
-----------------TGAGGGGAATGTTGTCTGGCTC 	1
---------------------GGGAATGTTGTCTGGCTCGAGGTG 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	7
----------------------GGAATGTTGTCTGGCTCGAGGTG 	1
----------------------GGAATGTTGTCTGGCTCGAGGTGC 	3
------------------------AATGTTGTCTGGCTCGAGGTG 	2
----------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	63
-----------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCCT 	3
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTCA 	1
--------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
----------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST045417
Overlaps with miRBase pre-miRNAs: osa-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
50 Oryza sativa GSM520635-18669 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTCCGAGA down 2 0


Secondary structure

TTCATTTTTATGGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGTT
---------------GTTGAGGGGAATGTTGTCTGG 	1
---------------GTTGAGGGGAATGTTGTCTGGTCC 	13
-------------------AGGGGAATGTTGTCTGGTCCGAGAC 	1
----------------------GGAATGTTGTCTGGTCCGAGA 	6
----------------------GGAATGTTGTCTGGTCCGAGACCT 	1
-----------------------GAATGTTGTCTGGTCCGAGAC 	1
-----------------------GAATGTTGTCTGGTCCGAGACC 	1
-------------------------ATGTTGTCTGGTCCGAGACCT 	1
-------------------------------------CCGAGACCTAACACCGGGCGGAA 	1
--------------------------------------------------------------------------------------------------GTTTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	27
-----------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	173
-------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------------------------------------------ACCAGGCTTCATTCCCCCCAACTC 	4

Overlaps with: MNEST041939 MNEST048846
Overlaps with miRBase pre-miRNAs: osa-MIR166c hvu-MIR166b
HuntMi prediction: true miRNA