miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Physcomitrella patens



32 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
----------------------GGATTGACGCATGGCACGAAG 	1
-----------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	12
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	84
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4
-------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
----------------------GGAATGCCGTCTGGACCGGAG 	2
----------------------GGAATGCCGTCTGGACCGGAGC 	5
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	12
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	84
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
------------GGAATGATGATTGGACCGAAG 	4
------------GGAATGATGATTGGACCGA 	1
---------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
----------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	12
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	84
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4
-----------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115097 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
-----------------TGGGAGGAATGCTGCATGGTC 	1
---------------------AGGAATGCTGCATGGTCTGAT 	2
----------------------GGAATGCTGCATGGTCTGATG 	9
--------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	3
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2
---------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	12
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	84
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4
----------------------------------------------------------------CGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313212 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	13
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313212 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	13
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313212 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
-----------------------GAATGCTGCATGGTCTGATG 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	13
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313212 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	13
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313213 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
----------------------GGATTGACGCATGGCACGAA 	1
-----------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	29
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313213 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
-----------------TGGGAGGAATGCTGCATGGTC 	1
----------------------GGAATGCTGCATGGTCTGATG 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	29
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313213 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
--------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	29
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313213 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
---------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	29
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313215 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
----------------------GGATTGACGCATGGCACGAAG 	2
-----------------------GATTGACGCATGGCACGAAG 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	38
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
--------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313215 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
---------------------AGGAATGCTGCATGGTCTGAT 	1
-----------------------GAATGCTGCATGGTCTGATG 	1
-----------------------GAATGCTGCATGGTCTGAT 	1
--------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	38
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
-----------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313215 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
----------------------GGAATGCCGTCTGGACCGGAGC 	2
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	38
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313215 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
------------GGAATGATGATTGGACCGAAG 	5
------------GGAATGATGATTGGACCGAAGT 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	38
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM115096 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
----------------------GGATTGACGCATGGCACGAAG 	2
------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	11
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	5
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	25
-------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
-------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM115096 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
------------GGAATGATGATTGGACCGAAG 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	11
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	5
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	25
-----------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
-----------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM115096 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
----------------------GGAATGCTGCATGGTCTGATG 	8
-----------------------GAATGCTGCATGGTCTGATGC 	1
-----------------------GAATGCTGCATGGTCTGAT 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	11
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	5
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	25
----------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM115096 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	11
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	5
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	25
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Physcomitrella patens GSM313216 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	34
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Physcomitrella patens GSM313216 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
---------------------AGGAATGCTGCATGGTCTGAT 	2
----------------------GGAATGCTGCATGGTCTGATG 	1
--------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	2
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	34
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Physcomitrella patens GSM313216 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
----------------------GGAATGCCGTCTGGACCGGAGC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	34
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Physcomitrella patens GSM313216 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
------------GGAATGATGATTGGACCGAAG 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	34
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	2
----------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	1

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Physcomitrella patens GSM313214 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
----------------------GGATTGACGCATGGCACGAAG 	2
-----------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
-----------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	50
------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4
-------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Physcomitrella patens GSM313214 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
----------------------GGAATGCTGCATGGTCTGAT 	1
-----------------------GAATGCTGCATGGTCTGATG 	2
-----------------------GAATGCTGCATGGTCTGATGC 	2
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	50
---------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4
----------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Physcomitrella patens GSM313214 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
----------------------GGAATGCCGTCTGGACCGGAG 	1
----------------------GGAATGCCGTCTGGACCGGAGC 	1
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	50
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Physcomitrella patens GSM313214 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
------------GGAATGATGATTGGACCGAAG 	15
------------GGAATGATGATTGGACCGAA 	1
---------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	50
----------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4
-----------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Physcomitrella patens GSM313217 TCGGACCAGGCTTCATTCCCC GGATTGACGCATGGCACGAAG down 5 0


Secondary structure

ATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCTAAGTTGCATCATG
-----------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	35
------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3

Overlaps with: MNEST039472 MNEST051376
Overlaps with miRBase pre-miRNAs: ppt-MIR166i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Physcomitrella patens GSM313217 TCGGACCAGGCTTCATTCCCC GGAATGCTGCATGGTCTGATG down 4 0


Secondary structure

TACCAGTGGTGCTGTGCTGGGAGGAATGCTGCATGGTCTGATGCTTTTGCTGCGACACAAGCCTCGGACCAGGCTTCATTCCCCTCAGCTCAGTCTCATATTG
---------------------AGGAATGCTGCATGGTCTGAT 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	35
---------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3

Overlaps with: MNEST039469 MNEST051373
Overlaps with miRBase pre-miRNAs: ppt-MIR166f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Physcomitrella patens GSM313217 TCGGACCAGGCTTCATTCCCC GGAATGCCGTCTGGACCGGAG down 3 0


Secondary structure

GCAACATGGGACTTTATCGTGGGGAATGCCGTCTGGACCGGAGCTGTGTGTCCACTCTGCATCAAAGCTTCGGACCAGGCTTCATTCCCCTCGAGGGAGTTTCATAGCA
----------------------GGAATGCCGTCTGGACCGGAG 	2
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	35
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3

Overlaps with: MNEST039466 MNEST051370
Overlaps with miRBase pre-miRNAs: ppt-MIR166c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Physcomitrella patens GSM313217 TCGGACCAGGCTTCATTCCCC GGAATGATGATTGGACCGAAG down 4 0


Secondary structure

GCTTGTCCTTGGGGAATGATGATTGGACCGAAGTTTTTTAGCGTTGGTTTGCCCAATTAAAGCTTCGGACCAGGCTTCATTCCCCTCGTAGAAG
------------GGAATGATGATTGGACCGAAG 	4
---------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	35
----------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3

Overlaps with: MNEST039467 MNEST051371
Overlaps with miRBase pre-miRNAs: ppt-MIR166d
HuntMi prediction: true miRNA