miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Selaginella moellendorffii

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Selaginella moellendorffii	GSM176654	TCGGACCAGGCTTCATTCCCC	GGAGTGCTGCCTGGCTCGAGA	down	3	0

Secondary structure

GACTCTAGAGCGAAAGATGAAGCAAAGAGGTTTATGTTGCGGGGAGTGCTGCCTGGCTCGAGACAGCATCGCCGAGATCTGATCAAATCGCAAAGTTGAGAAACAAGCATCACAGTTTGATCTGGAGATCGTGTTGTGTCGGACCAGGCTTCATTCCCCTCAGCTACAAATTTGCGTCCCTCATTTCTCTGCTCGCTC
------------------------------------------GGAGTGCTGCCTGGCTCGAG 	4
------------------------------------------GGAGTGCTGCCTGGCTCGA 	1
------------------------------------------GGAGTGCTGCCTGGCTCGAGA 	144
----------------------------------------------------------------------------------------------------------------------------------------TGTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	4
------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	527
------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	176
------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1424
-------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
-------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	14

Overlaps with: MNEST044945 MNEST045781
Overlaps with miRBase pre-miRNAs: smo-MIR166c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Selaginella moellendorffii	GSM176654	TCGGACCAGGCTTCATTCCCC	GGAGTGCTGCCTGGCTCGAGA	down	3	0

Secondary structure

TTTATGTTGCGGGGAGTGCTGCCTGGCTCGAGACAGCATCGCCGAGATCTGATCAAATCGCAAAGTTGAGAAACAAGCATCACAGTTTGATCTGGAGATCGTGTTGTGTCGGACCAGGCTTCATTCCCCTCAGCTACA
------------GGAGTGCTGCCTGGCTCGAG 	4
------------GGAGTGCTGCCTGGCTCGA 	1
------------GGAGTGCTGCCTGGCTCGAGA 	144
----------------------------------------------------------------------------------------------------------TGTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	1
-----------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	4
------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	527
------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	176
------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1424
-------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	2
-------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
-------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	14

Overlaps with: MNEST044945 MNEST045781
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Selaginella moellendorffii	GSM176654	TCGGACCAGGCTTCATTCCCC	GGATTGTTGCCTGGCTCGAGG	down	4	0

Secondary structure

GAGATCGATTGCGGAGCAAGTCCTGGATGTGGGGATTGTTGCCTGGCTCGAGGGAGGCATTCCTTTGATCTTTTCTCTCCTGGGAAGTACTCCAGAAGAACTGTGCCAGAAATGTGCGCTCTCGGACCAGGCTTCATTCCCCTCATCTGAGATTGCACCATTCACTCTCGC
------------------------GGATGTGGGGATTGTTGCCTG 	23
-------------------------GATGTGGGGATTGTTGCCTGG 	22
--------------------------ATGTGGGGATTGTTGCCTGG 	2
--------------------------------GGATTGTTGCCTGGCTCGAGGG 	1
--------------------------------GGATTGTTGCCTGGCTCGAGG 	168
--------------------------------GGATTGTTGCCTGGCTCGAG 	6
---------------------------------GATTGTTGCCTGGCTCGAGG 	6
-------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	4
-------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	527
-------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	176
-------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1424
--------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	2
--------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	63
--------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	14
--------------------------------------------------------------------------------------------------------------------------------AGGCTTCATTCCCCTCATCTG 	6

Overlaps with: MNEST039733 MNEST054576
Overlaps with miRBase pre-miRNAs: smo-MIR166a
HuntMi prediction: true miRNA