miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Solanum lycopersicum

17 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTTTGGTTCGAAA	down	2	0

Secondary structure

CATTTGTTGAGGGGAATGTTGTTTGGTTCGAAATCATTCAAACAAATTAAAATTCATGCATCTCGATGATCGATGAATTGAATAATTTCGGACCAGGCTTCATTCCCCCCAACTCAA
-------TGAGGGGAATGTTGTTTGGTT 	1
-------TGAGGGGAATGTTGTTTGGT 	1
--------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	4
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	AGAATGTCGTCTGGTTCGAGA	down	3	0

Secondary structure

TGGAAAGAGAGAGACATGTAATATTGTTGAGGAGAATGTCGTCTGGTTCGAGATCTTTCATAAGAAAGGTAAATGAATGACAAGTTTTCATATATGTATCGTGAATGATTTCGGACCAGGCTTCATTCCCCTCAACTCTGATCCAACAAGTATGTGTTCT
-------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	4
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	5
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

Overlaps with: MNEST041531 MNEST054543
Overlaps with miRBase pre-miRNAs: sly-MIR166a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTCTGGCTCGAGG	down	3	0

Secondary structure

GAGGAAGTTCTCTCAGTTGAGGGGAATGTTGTCTGGCTCGAGGTCACCAATTAGATCCATAATCCCTATATATACCATGCTTTTCAAAAAAAAGATTTATAATATGAAAAGGGGTTATGAATCATGTGTTAGTGTTGTCGGACCAGGCTTCATTCCCCCCAATTGTTACTCCTCTAG
---------------GTTGAGGGGAATGTTGTCTGG 	6
----------------------GGAATGTTGTCTGGCTCGAGG 	7
----------------------GGAATGTTGTCTGGCTCGAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTTTGGCTCGAGG	down	3	0

Secondary structure

TTAATTTTGAGGGGAATGTTGTTTGGCTCGAGGCCACCAACTTCATCTAATGTGAGCAAACTCTTTGTTAGTGTCGTCGGACCAGGCTTCATTCCCCTCAAAATCT
--------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	5
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTCTGGCTCGAGG	down	3	0

Secondary structure

AAGATATCATAAAGGGAGTTTTTCTTTTGTGGGGAATGTTGTCTGGCTCGAGGAAATCTTCAATCTTGATTAATTTTAATTTTTTTTAACATGTTTTTTAATAGTAATTACTATGTTGTTACATAGATCTATACAATATTTATGATAGATCTACGAATTTTTTATCATATTGTTTGAGTATCGTCGGACCAGGCTTCATTCCCCTCAAAGATTATTACTATCGCAAAATTAAA
--------------------------------GGAATGTTGTCTGGCTCGAGGA 	1
--------------------------------GGAATGTTGTCTGGCTCGAGG 	7
--------------------------------GGAATGTTGTCTGGCTCGAG 	1
-----------------------------------ATGTTGTCTGGCTCGAGGAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTTTGGCTCGAAG	down	3	0

Secondary structure

TCCAGATTTGAGGGGAATGTTGTTTGGCTCGAAGTCATTATCTCATTATAGATCGAACCAATCCAATTTTATATATTCAATCTAGTTTAAAATATATGTGAATTACGATGATGATGAGATAGTGTCTTCGGACCAGGCTTCATTCCCCCCAATTTGGA
-----------------------------------------------------------------------------------------------------------------------------CTTCGGACCAGGCTTCATTCC 	1
------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	4
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	AGAATGTTGTCTGGTTCGTGA	down	4	0

Secondary structure

ACTAAACAAGATCATGTTAAGGAGAATGTTGTCTGGTTCGTGACCATATATCTTTCTTCACATAAATGATCTCGGACCAGGCTTCATTCCCCTCAACTCATCAAGGTTATG
-----------------------GAATGTTGTCTGGTTCGTGA 	1
---------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	16
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	5
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Solanum lycopersicum	GSM304985	TCGGACCAGGCTTCATTCCCC	AGAATGTTGTCTGGTTCGAAA	down	3	0

Secondary structure

ATATTGTTGGGGAGAATGTTGTCTGGTTCGAAATCTTTCTATAGAAAAATCAGTGGTGGATTCAGTTATGAGTTTCAAGATCGTTAAATCTTATATATGTACAAAAATAAGTACAATATATATTTTTAGACCCTAAAATGTCGAATATATATTCTGAATTCGTCAATTTATTGAGTGATTTCGGACCAGGCTTCATTCCCCTCAACTCTA
------------AGAATGTTGTCTGGTTCGAAA 	4
------------AGAATGTTGTCTGGTTCGAA 	1
-----------------------------------------TAGAAAAATCAGTGGTGGATTC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	103
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	10
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	17

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTTTGGTTCGAAA	down	2	0

Secondary structure

CATTTGTTGAGGGGAATGTTGTTTGGTTCGAAATCATTCAAACAAATTAAAATTCATGCATCTCGATGATCGATGAATTGAATAATTTCGGACCAGGCTTCATTCCCCCCAACTCAA
-----------------------------------------------------------------------------------AATTTCGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
--------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
---------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	AGAATGTCGTCTGGTTCGAGA	down	3	0

Secondary structure

TGGAAAGAGAGAGACATGTAATATTGTTGAGGAGAATGTCGTCTGGTTCGAGATCTTTCATAAGAAAGGTAAATGAATGACAAGTTTTCATATATGTATCGTGAATGATTTCGGACCAGGCTTCATTCCCCTCAACTCTGATCCAACAAGTATGTGTTCT
------------------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2
-------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

Overlaps with: MNEST041531 MNEST054543
Overlaps with miRBase pre-miRNAs: sly-MIR166a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTCTGGCTCGAGG	down	3	0

Secondary structure

GAGGAAGTTCTCTCAGTTGAGGGGAATGTTGTCTGGCTCGAGGTCACCAATTAGATCCATAATCCCTATATATACCATGCTTTTCAAAAAAAAGATTTATAATATGAAAAGGGGTTATGAATCATGTGTTAGTGTTGTCGGACCAGGCTTCATTCCCCCCAATTGTTACTCCTCTAG
---------------GTTGAGGGGAATGTTGTCTGG 	1
----------------------GGAATGTTGTCTGGCTCGAGG 	2
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTTTGGCTCGAGG	down	3	0

Secondary structure

TTAATTTTGAGGGGAATGTTGTTTGGCTCGAGGCCACCAACTTCATCTAATGTGAGCAAACTCTTTGTTAGTGTCGTCGGACCAGGCTTCATTCCCCTCAAAATCT
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
----------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTCTGGCTCGAGG	down	3	0

Secondary structure

AAGATATCATAAAGGGAGTTTTTCTTTTGTGGGGAATGTTGTCTGGCTCGAGGAAATCTTCAATCTTGATTAATTTTAATTTTTTTTAACATGTTTTTTAATAGTAATTACTATGTTGTTACATAGATCTATACAATATTTATGATAGATCTACGAATTTTTTATCATATTGTTTGAGTATCGTCGGACCAGGCTTCATTCCCCTCAAAGATTATTACTATCGCAAAATTAAA
-------------------------TTTGTGGGGAATGTTGTCTGG 	1
--------------------------------GGAATGTTGTCTGGCTCGAGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	AGAATGTTGTCTGGTTCGTGA	down	4	0

Secondary structure

ACTAAACAAGATCATGTTAAGGAGAATGTTGTCTGGTTCGTGACCATATATCTTTCTTCACATAAATGATCTCGGACCAGGCTTCATTCCCCTCAACTCATCAAGGTTATG
---------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	4
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTTTGGCTCGAAG	down	3	0

Secondary structure

TCCAGATTTGAGGGGAATGTTGTTTGGCTCGAAGTCATTATCTCATTATAGATCGAACCAATCCAATTTTATATATTCAATCTAGTTTAAAATATATGTGAATTACGATGATGATGAGATAGTGTCTTCGGACCAGGCTTCATTCCCCCCAATTTGGA
------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
-------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	AGAATGTTGTCTGGTTCGAAA	down	3	0

Secondary structure

ATATTGTTGGGGAGAATGTTGTCTGGTTCGAAATCTTTCTATAGAAAAATCAGTGGTGGATTCAGTTATGAGTTTCAAGATCGTTAAATCTTATATATGTACAAAAATAAGTACAATATATATTTTTAGACCCTAAAATGTCGAATATATATTCTGAATTCGTCAATTTATTGAGTGATTTCGGACCAGGCTTCATTCCCCTCAACTCTA
------------AGAATGTTGTCTGGTTCGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Solanum lycopersicum	GSM304986	TCGGACCAGGCTTCATTCCCC	GGAATGTTGTCTGGCTCGAGG	down	3	0

Secondary structure

ATGTAACGGGAGAGAGAGCTTTTGTATTGCGGGGAATGTTGTCTGGCTCGAGGAATCAAAAATTGTTTCTTATAGATAGATCTGTATATTTTGTTTATAGATCTATAATGTTTTTGATGTCGTCGGACCAGGCTTCATTCCCCACAATGAATATTGCTCTCTCACAACACTT
-------------------------ATTGCGGGGAATGTTGTCTGG 	1
--------------------------TTGCGGGGAATGTTGTCTGG 	3
--------------------------------GGAATGTTGTCTGGCTCGAGG 	2
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCA 	1
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	76
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	11

HuntMi prediction: true miRNA