miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCATTCCCC

selected species: Vitis vinifera



20 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

GAAGAAAGAAGAGGAAGCTTTGTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACCAACTAGATCTATGATCTGCGTGTAATTGTGAATGGGTGATCGTCTCTCAGTTTTGAAGGAGAGATTTTGAGTGATCTTTGATCATGGGTTGGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTTATTGCTTCCATTGCTGCTGATC
--------------------------------GGAATGTTGTCTGGCTCGAGGACA 	1
--------------------------------GGAATGTTGTCTGGCTCGAGGAC 	6
--------------------------------GGAATGTTGTCTGGCTCGAGGA 	2
--------------------------------GGAATGTTGTCTGGCTCGAGG 	254
--------------------------------GGAATGTTGTCTGGCTCGAG 	4
--------------------------------GGAATGTTGTCTGGCTCGA 	1
---------------------------------GAATGTTGTCTGGCTCGAGGA 	1
---------------------------------GAATGTTGTCTGGCTCGAGG 	2
----------------------------------AATGTTGTCTGGCTCGAGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCAT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCCC 	55
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCCC 	47
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCC 	549
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	35
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	535
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1426434
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	8321
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4997
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	11
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2257
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	43
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	4758


Overlaps with: MNEST041587 MNEST054793
Overlaps with miRBase pre-miRNAs: vvi-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458927 TCGGACCAGGCTTCATTCCCC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

ATGTAGTTGTGGGGAATGTTGGCTGGCTCGAGGCTTTCTTGAGTGATTTTATGTATACCTCAAAAAGCTTCGGACCAGGCTTCATTCCCCTCAACACAC
---------TGGGGAATGTTGGCTGGCTCG 	1
------------GGAATGTTGGCTGGCTCGAGGC 	4
------------GGAATGTTGGCTGGCTCGAGG 	146
------------GGAATGTTGGCTGGCTCGAG 	3
------------GGAATGTTGGCTGGCTCGA 	1
-------------GAATGTTGGCTGGCTCGAGGC 	1
-------------GAATGTTGGCTGGCTCGAGG 	1
------------------------------------------------------------------GCTTCGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCCCC 	14
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCC 	13
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	42
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	6864
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	1761
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	30
--------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	3
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2556
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1426434
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	8321
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4997
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	256
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2257
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	43
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	14
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	4758



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458927 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCGAGA down 2 0


Secondary structure

TCCCTCTCTTGAACAGTTGAGGGGAATGTTGTCTGGTTCGAGATCCTTCGTATGAAGCTCAAGCAGCGTTTGAATGATTTCGGACCAGGCTTCATTCCCCTCAACCCAAAAACCAGACT
----------------------GGAATGTTGTCTGGTTCGAGA 	1
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCATTC 	3
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCCC 	1
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	66
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATT 	1
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	42
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	6864
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	1761
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	30
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	3
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2556
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1426434
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	8321
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4997
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	256
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2257
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	43
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	14
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	4758


Overlaps with: MNEST041589 MNEST054795
Overlaps with miRBase pre-miRNAs: vvi-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458927 TCGGACCAGGCTTCATTCCCC GGATTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

TTCTGCTTTGAGGGGATTGTTGTCTGGCTCGAGGCCACCAACCATCTTTGATTGATTCAAATACTTTGATCAGCTTCAACCCATCTTCTCCTTCAATTCAATTCCACCCTCTGATTATGTGTTAGTGCCCTCGGACCAGGCTTCATTCCCCTCAATCACTG
-------------------------------------------------------------------------------------------------------------------------------CCCTCGGACCAGGCTTCATTC 	2
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCCCC 	3
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCC 	27
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCT 	5
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2567
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	521
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	221
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	4
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2556
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1426434
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	8321
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4997
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	256
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2257
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	43
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	14
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	4758



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458927 TCGGACCAGGCTTCATTCCCC GGAACGCTGTCTGGTTCGAGA down 4 0


Secondary structure

GAACAGTTGAGGGGAACGCTGTCTGGTTCGAGACCACTCGCTTCAAGTACAGACATAATCTGAATGATCTCGGACCAGGCTTCATTCCCCCCAACTCAA
------------GGAACGCTGTCTGGTTCGAGA 	2
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	9
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	154
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	8
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	6205
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	74
-------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	13
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCC 	3
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	2567
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	521
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	221
--------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	4
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	35
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	535
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	1426434
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	8321
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4997
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCCC 	1
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	11
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	2257
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	43
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	4758



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Vitis vinifera GSM458930-2718 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

GAAGAAAGAAGAGGAAGCTTTGTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACCAACTAGATCTATGATCTGCGTGTAATTGTGAATGGGTGATCGTCTCTCAGTTTTGAAGGAGAGATTTTGAGTGATCTTTGATCATGGGTTGGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTTATTGCTTCCATTGCTGCTGATC
-------------------------------GGGAATGTTGTCTGGCTCGAG 	1
--------------------------------GGAATGTTGTCTGGCTCGAGGACA 	1
--------------------------------GGAATGTTGTCTGGCTCGAGGAC 	46
--------------------------------GGAATGTTGTCTGGCTCGAGGA 	10
--------------------------------GGAATGTTGTCTGGCTCGAGG 	1185
--------------------------------GGAATGTTGTCTGGCTCGAG 	55
--------------------------------GGAATGTTGTCTGGCTCGA 	2
---------------------------------GAATGTTGTCTGGCTCGAGGAC 	2
---------------------------------GAATGTTGTCTGGCTCGAGGA 	8
---------------------------------GAATGTTGTCTGGCTCGAGG 	4
---------------------------------GAATGTTGTCTGGCTCGAG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTCGGACCAGGCTTCATTCCC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTCCCC 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTC 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCCC 	19
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCC 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCCC 	22
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCC 	504
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	31
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	537
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	489651
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6915
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	6068
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	940
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	27
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	998


Overlaps with: MNEST041587 MNEST054793
Overlaps with miRBase pre-miRNAs: vvi-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Vitis vinifera GSM458930-2718 TCGGACCAGGCTTCATTCCCC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

ATGTAGTTGTGGGGAATGTTGGCTGGCTCGAGGCTTTCTTGAGTGATTTTATGTATACCTCAAAAAGCTTCGGACCAGGCTTCATTCCCCTCAACACAC
------------GGAATGTTGGCTGGCTCGAGGC 	4
------------GGAATGTTGGCTGGCTCGAGG 	50
------------GGAATGTTGGCTGGCTCGAG 	1
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCCC 	1
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCC 	16
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	3
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	619
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2779
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	79
--------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	10
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2518
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	489651
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6915
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	6068
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	58
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	940
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	27
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	3
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	998



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Vitis vinifera GSM458930-2718 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCGAGA down 2 0


Secondary structure

TCCCTCTCTTGAACAGTTGAGGGGAATGTTGTCTGGTTCGAGATCCTTCGTATGAAGCTCAAGCAGCGTTTGAATGATTTCGGACCAGGCTTCATTCCCCTCAACCCAAAAACCAGACT
----------------------GGAATGTTGTCTGGTTCGAGA 	18
---------------------------------------------------------------------------GATTTCGGACCAGGCTTCATTCCC 	1
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCATTCCCC 	1
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCATTC 	19
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCATT 	1
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCAT 	1
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCCC 	3
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	158
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	9
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	3
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	619
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2779
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	79
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	10
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2518
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	489651
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6915
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	6068
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	58
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	940
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	27
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	3
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	998


Overlaps with: MNEST041589 MNEST054795
Overlaps with miRBase pre-miRNAs: vvi-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Vitis vinifera GSM458930-2718 TCGGACCAGGCTTCATTCCCC GGATTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

TTCTGCTTTGAGGGGATTGTTGTCTGGCTCGAGGCCACCAACCATCTTTGATTGATTCAAATACTTTGATCAGCTTCAACCCATCTTCTCCTTCAATTCAATTCCACCCTCTGATTATGTGTTAGTGCCCTCGGACCAGGCTTCATTCCCCTCAATCACTG
---------GAGGGGATTGTTGTCTGGCTC 	2
---------GAGGGGATTGTTGTCTGGC 	1
-------------GGATTGTTGTCTGGCTCGAGG 	4
-------------GGATTGTTGTCTGGCTCGAG 	1
-------------------------------------------------------------------------------------------------------------------------------CCCTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCC 	5
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCT 	2
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	658
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	167
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	63
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	4
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2518
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	489651
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6915
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	6068
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	58
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	940
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	27
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	3
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	998



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Vitis vinifera GSM458930-2718 TCGGACCAGGCTTCATTCCCC GGAACGCTGTCTGGTTCGAGA down 4 0


Secondary structure

GAACAGTTGAGGGGAACGCTGTCTGGTTCGAGACCACTCGCTTCAAGTACAGACATAATCTGAATGATCTCGGACCAGGCTTCATTCCCCCCAACTCAA
------------GGAACGCTGTCTGGTTCGAGACCA 	1
------------GGAACGCTGTCTGGTTCGAGA 	31
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	23
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	34
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	9
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	2992
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	118
-------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	12
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCC 	1
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	658
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	167
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	63
--------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	31
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	537
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	489651
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6915
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	6068
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	3
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	940
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	27
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCCC 	1
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	998



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Vitis vinifera GSM458929-2717 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

GAAGAAAGAAGAGGAAGCTTTGTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACCAACTAGATCTATGATCTGCGTGTAATTGTGAATGGGTGATCGTCTCTCAGTTTTGAAGGAGAGATTTTGAGTGATCTTTGATCATGGGTTGGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTTATTGCTTCCATTGCTGCTGATC
----------------------------GAGGGGAATGTTGTCTGGCTC 	1
------------------------------GGGGAATGTTGTCTGGCTCG 	1
-------------------------------GGGAATGTTGTCTGGCTCGAGGAC 	1
--------------------------------GGAATGTTGTCTGGCTCGAGGACA 	2
--------------------------------GGAATGTTGTCTGGCTCGAGGAC 	19
--------------------------------GGAATGTTGTCTGGCTCGAGGA 	1
--------------------------------GGAATGTTGTCTGGCTCGAGG 	188
--------------------------------GGAATGTTGTCTGGCTCGAG 	10
---------------------------------GAATGTTGTCTGGCTCGAGGAC 	3
---------------------------------GAATGTTGTCTGGCTCGAGGA 	2
---------------------------------GAATGTTGTCTGGCTCGAGG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------GGTGTCGTCGGACCAGGCTTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGTCGGACCAGGCTTCAT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTCCCC 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCCC 	15
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCCC 	31
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCC 	727
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	17
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	25
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	427
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	545065
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6740
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	7105
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1164
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	20
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1250


Overlaps with: MNEST041587 MNEST054793
Overlaps with miRBase pre-miRNAs: vvi-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Vitis vinifera GSM458929-2717 TCGGACCAGGCTTCATTCCCC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

ATGTAGTTGTGGGGAATGTTGGCTGGCTCGAGGCTTTCTTGAGTGATTTTATGTATACCTCAAAAAGCTTCGGACCAGGCTTCATTCCCCTCAACACAC
------------GGAATGTTGGCTGGCTCGAGG 	10
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCC 	8
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	8
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	2162
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2570
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	132
--------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	14
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	6
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2026
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	545065
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6740
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	7105
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	108
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1164
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	20
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	6
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1250



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Vitis vinifera GSM458929-2717 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCGAGA down 2 0


Secondary structure

TCCCTCTCTTGAACAGTTGAGGGGAATGTTGTCTGGTTCGAGATCCTTCGTATGAAGCTCAAGCAGCGTTTGAATGATTTCGGACCAGGCTTCATTCCCCTCAACCCAAAAACCAGACT
---------------------GGGAATGTTGTCTGGTTCGAG 	1
----------------------GGAATGTTGTCTGGTTCGAGA 	2
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCATTCCCC 	2
----------------------------------------------------------------------------ATTTCGGACCAGGCTTCATTC 	3
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCCC 	2
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCC 	1
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	130
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	5
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	8
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	2162
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	2570
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	132
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTC 	14
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	6
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2026
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	545065
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6740
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	7105
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	108
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1164
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	20
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	6
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1250


Overlaps with: MNEST041589 MNEST054795
Overlaps with miRBase pre-miRNAs: vvi-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Vitis vinifera GSM458929-2717 TCGGACCAGGCTTCATTCCCC GGATTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

TTCTGCTTTGAGGGGATTGTTGTCTGGCTCGAGGCCACCAACCATCTTTGATTGATTCAAATACTTTGATCAGCTTCAACCCATCTTCTCCTTCAATTCAATTCCACCCTCTGATTATGTGTTAGTGCCCTCGGACCAGGCTTCATTCCCCTCAATCACTG
---------GAGGGGATTGTTGTCTGGCT 	1
-------------GGATTGTTGTCTGGCTCGAG 	1
--------------GATTGTTGTCTGGCTCGAGGC 	2
-------------------------------------------------------------------------------------------------------------------------------CCCTCGGACCAGGCTTCATTCCCC 	1
-------------------------------------------------------------------------------------------------------------------------------CCCTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCCCC 	2
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCC 	10
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCT 	4
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	676
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	263
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	46
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	6
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	6
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2026
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	545065
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6740
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	7105
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	108
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1164
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	20
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	6
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1250



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Vitis vinifera GSM458929-2717 TCGGACCAGGCTTCATTCCCC GGAACGCTGTCTGGTTCGAGA down 4 0


Secondary structure

GAACAGTTGAGGGGAACGCTGTCTGGTTCGAGACCACTCGCTTCAAGTACAGACATAATCTGAATGATCTCGGACCAGGCTTCATTCCCCCCAACTCAA
------------GGAACGCTGTCTGGTTCGAGA 	30
-------------GAACGCTGTCTGGTTCGAGA 	1
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	15
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	53
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	12
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	2118
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	126
-------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	9
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	676
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	263
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	46
--------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	6
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	25
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	427
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	545065
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	6740
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	7105
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	2
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1164
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	20
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1250



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Vitis vinifera GSM458928-2716 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG down 3 0


Secondary structure

GAAGAAAGAAGAGGAAGCTTTGTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACCAACTAGATCTATGATCTGCGTGTAATTGTGAATGGGTGATCGTCTCTCAGTTTTGAAGGAGAGATTTTGAGTGATCTTTGATCATGGGTTGGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTTATTGCTTCCATTGCTGCTGATC
--------------------------TTGAGGGGAATGTTGTCTGGC 	1
--------------------------------GGAATGTTGTCTGGCTCGAGGAC 	37
--------------------------------GGAATGTTGTCTGGCTCGAGGA 	10
--------------------------------GGAATGTTGTCTGGCTCGAGG 	1302
--------------------------------GGAATGTTGTCTGGCTCGAG 	100
--------------------------------GGAATGTTGTCTGGCTCGA 	9
---------------------------------GAATGTTGTCTGGCTCGAGGAC 	2
---------------------------------GAATGTTGTCTGGCTCGAGGA 	13
---------------------------------GAATGTTGTCTGGCTCGAGG 	4
---------------------------------GAATGTTGTCTGGCTCGAG 	1
----------------------------------AATGTTGTCTGGCTCGAGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTCCCC 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCGGACCAGGCTTCATTC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCCC 	25
---------------------------------------------------------------------------------------------------------------------------------------------------------CGTCGGACCAGGCTTCATTCCC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCCC 	31
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCCC 	442
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	6
----------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	419
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	542859
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4584
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3510
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1417
------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	29
-------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1351


Overlaps with: MNEST041587 MNEST054793
Overlaps with miRBase pre-miRNAs: vvi-MIR166e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Vitis vinifera GSM458928-2716 TCGGACCAGGCTTCATTCCCC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

ATGTAGTTGTGGGGAATGTTGGCTGGCTCGAGGCTTTCTTGAGTGATTTTATGTATACCTCAAAAAGCTTCGGACCAGGCTTCATTCCCCTCAACACAC
------------GGAATGTTGGCTGGCTCGAGG 	22
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCCCC 	4
-------------------------------------------------------------------CTTCGGACCAGGCTTCATTCC 	49
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	2
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	756
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	320
--------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	33
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	6
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2571
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	542859
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4584
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3510
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	85
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1417
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	29
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	7
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1351



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Vitis vinifera GSM458928-2716 TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGTTCGAGA down 2 0


Secondary structure

TCCCTCTCTTGAACAGTTGAGGGGAATGTTGTCTGGTTCGAGATCCTTCGTATGAAGCTCAAGCAGCGTTTGAATGATTTCGGACCAGGCTTCATTCCCCTCAACCCAAAAACCAGACT
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCCCC 	3
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTCC 	244
-----------------------------------------------------------------------------TTTCGGACCAGGCTTCATTC 	5
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCCT 	2
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCCC 	756
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCCC 	320
------------------------------------------------------------------------------TTCGGACCAGGCTTCATTCC 	33
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	6
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2571
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	542859
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4584
-------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3510
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	85
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1417
--------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	29
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	7
---------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1351


Overlaps with: MNEST041589 MNEST054795
Overlaps with miRBase pre-miRNAs: vvi-MIR166g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Vitis vinifera GSM458928-2716 TCGGACCAGGCTTCATTCCCC GGATTGTTGTCTGGCTCGAGG down 4 0


Secondary structure

TTCTGCTTTGAGGGGATTGTTGTCTGGCTCGAGGCCACCAACCATCTTTGATTGATTCAAATACTTTGATCAGCTTCAACCCATCTTCTCCTTCAATTCAATTCCACCCTCTGATTATGTGTTAGTGCCCTCGGACCAGGCTTCATTCCCCTCAATCACTG
---------GAGGGGATTGTTGTCTGGCTC 	2
-------------GGATTGTTGTCTGGCTCGAGG 	6
-------------GGATTGTTGTCTGGCTCGAG 	1
--------------GATTGTTGTCTGGCTCGAGGCC 	1
--------------GATTGTTGTCTGGCTCGAGGC 	2
--------------GATTGTTGTCTGGCTCGAG 	1
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCCCC 	1
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTCC 	14
--------------------------------------------------------------------------------------------------------------------------------CCTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCCT 	3
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1143
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	229
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	290
---------------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	10
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCTC 	6
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCT 	2571
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	542859
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4584
----------------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3510
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCCT 	85
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1417
-----------------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	29
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCCT 	7
------------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1351



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Vitis vinifera GSM458928-2716 TCGGACCAGGCTTCATTCCCC GGAACGCTGTCTGGTTCGAGA down 4 0


Secondary structure

GAACAGTTGAGGGGAACGCTGTCTGGTTCGAGACCACTCGCTTCAAGTACAGACATAATCTGAATGATCTCGGACCAGGCTTCATTCCCCCCAACTCAA
------------GGAACGCTGTCTGGTTCGAGA 	7
-----------------------------------------------------------------GATCTCGGACCAGGCTTCATTCCCC 	1
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCCC 	13
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCC 	1
------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCCC 	183
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCC 	42
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	14903
-------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	444
-------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	29
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCCC 	1143
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCCC 	229
--------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	290
--------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	10
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCCC 	17
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCCC 	419
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCCC 	542859
---------------------------------------------------------------------TCGGACCAGGCTTCATTCCC 	4584
---------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3510
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCCC 	4
----------------------------------------------------------------------CGGACCAGGCTTCATTCCCC 	1417
----------------------------------------------------------------------CGGACCAGGCTTCATTCCC 	29
-----------------------------------------------------------------------GGACCAGGCTTCATTCCCC 	1351



HuntMi prediction: true miRNA