miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCGGACCAGGCTTCATTCCTC

selected species: Oryza sativa

16 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM693280	TCGGACCAGGCTTCATTCCTC	GGAATGGAGGCTGATCCAAGA	down	5	0

Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
------------------------AATGGAGGCTGATCCAAGATC 	1
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	95
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	4
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCTC 	3
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1881
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	28
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCA 	1
-----------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	6
------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	10

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM693280	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	10
------------GGAATGTTGGCTGGCTCGAG 	2
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1881
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	648
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	28
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	6
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	10

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM571078-22531	TCGGACCAGGCTTCATTCCTC	GGAATGGAGGCTGATCCAAGA	down	5	0

Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
------------------------AATGGAGGCTGATCCAAGATC 	1
-------------------------------------------------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTCCTC 	1
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	781
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	14
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCT 	2
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	43
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCTC 	6
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1742
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	20
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCA 	3
-----------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	52
------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	10

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM571078-22531	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
--TGGCTTGTGGGGAATGTTGGCTGG 	1
------------GGAATGTTGGCTGGCTCGAGG 	20
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1742
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	20
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	228
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	52
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	10

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM520638-18676	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	39
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	5
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	324
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	1
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	3

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM520640-18679	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	12
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	24
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	207
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	8

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM571077-22529	TCGGACCAGGCTTCATTCCTC	GGAATGGAGGCTGATCCAAGA	down	5	0

Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
------------------------AATGGAGGCTGATCCAAGATC 	1
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	713
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCT 	6
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	6
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	2
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	39
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCTC 	7
---------------------------------------------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1417
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	19
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCA 	1
-----------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	42
-----------------------------------------------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	2
------------------------------------------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	14

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM571077-22529	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	20
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1417
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	19
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	278
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	42
-----------------------------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	2
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	14

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM520634-18667	TCGGACCAGGCTTCATTCCTC	GGAATGGAGGCTGATCCAAGA	down	5	0

Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	22

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM520634-18667	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	22

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Oryza sativa	GSM520636-18672	TCGGACCAGGCTTCATTCCTC	GGAATGGAGGCTGATCCAAGA	down	5	0

Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	38
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	38

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Oryza sativa	GSM520636-18672	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	2
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	1
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	38

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Oryza sativa	GSM520635-18669	TCGGACCAGGCTTCATTCCTC	GGAATGGAGGCTGATCCAAGA	down	5	0

Secondary structure

GAGGAAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCATTGCTTGGTGCAAAATACTAGGGCATTGTTGTAAGTGCCATTAGTTCTTTTTTGTTTCCGAGTTTGTTATCGAGGATCTCGGACCAGGCTTCATTCCTCACACCGTGCTTCCCGTTGC
--------------TGGTGTCTGGAATGGAGGCTGATC 	1
------------------------------------------------------------------------------------------------------------------------GATCTCGGACCAGGCTTCATTCC 	1
--------------------------------------------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	12
----------------------------------------------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	23

Overlaps with: MNEST041943 MNEST048850
Overlaps with miRBase pre-miRNAs: osa-MIR166g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Oryza sativa	GSM520635-18669	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	23

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Oryza sativa	GSM520637-18674	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	20
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	104
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	1

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Oryza sativa	GSM520639-18678	TCGGACCAGGCTTCATTCCTC	GGAATGTTGGCTGGCTCGAGG	down	2	2

Secondary structure

GGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCTTCATTCCTCGCAAGCCGA
------------GGAATGTTGGCTGGCTCGAGG 	21
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	42
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	1075
----------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	9
------------------------------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	4

Overlaps with: MNEST041944 MNEST048851
Overlaps with miRBase pre-miRNAs: osa-MIR166h
HuntMi prediction: true miRNA