miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGACCAGGCTTCATTCCTC

selected species: Vitis vinifera



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

TGTTTTTTGAGGGGAATGTTGGCTGGCTCGAGGCATTCACATAAGAAGAAGATATATAAGTGAAGGTGTCGGACCAGGCTTCATTCCTCTCAAATATA
----TTTTGAGGGGAATGTTGGCTG 	1
-----TTTGAGGGGAATGTTGGCTGG 	1
------------GGAATGTTGGCTGGCTCGAGGCAT 	1
------------GGAATGTTGGCTGGCTCGAGGC 	4
------------GGAATGTTGGCTGGCTCGAGG 	146
------------GGAATGTTGGCTGGCTCGAG 	3
------------GGAATGTTGGCTGGCTCGA 	1
-------------GAATGTTGGCTGGCTCGAGGC 	1
-------------GAATGTTGGCTGGCTCGAGG 	1
------------------------------------------------------------------TGTCGGACCAGGCTTCATTCC 	3
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCTC 	2
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCT 	5
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	3
-------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	3
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCTC 	2
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCT 	97
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	94652
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	406
--------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	4997
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTCT 	13
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	136
---------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	1
----------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	310



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458930-2718 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

TGTTTTTTGAGGGGAATGTTGGCTGGCTCGAGGCATTCACATAAGAAGAAGATATATAAGTGAAGGTGTCGGACCAGGCTTCATTCCTCTCAAATATA
------------GGAATGTTGGCTGGCTCGAGGC 	4
------------GGAATGTTGGCTGGCTCGAGG 	50
------------GGAATGTTGGCTGGCTCGAG 	1
------------------------------------------------------------------TGTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCT 	9
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	7
-------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCTC 	3
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCT 	199
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	64215
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	856
--------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	6068
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTCT 	13
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	108
---------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	3
----------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	126



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

TGTTTTTTGAGGGGAATGTTGGCTGGCTCGAGGCATTCACATAAGAAGAAGATATATAAGTGAAGGTGTCGGACCAGGCTTCATTCCTCTCAAATATA
-----TTTGAGGGGAATGTTGGCTGG 	1
------------GGAATGTTGGCTGGCTCGAGG 	10
------------------------------------------------------------------TGTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCTC 	3
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCT 	13
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	17
-------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	4
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCTC 	2
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCT 	216
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	100181
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	943
--------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	7105
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTCT 	20
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	190
---------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	3
----------------------------------------------------------------------GGACCAGGCTTCATTCCTCT 	1
----------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	182



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458928-2716 TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG down 2 2


Secondary structure

TGTTTTTTGAGGGGAATGTTGGCTGGCTCGAGGCATTCACATAAGAAGAAGATATATAAGTGAAGGTGTCGGACCAGGCTTCATTCCTCTCAAATATA
------------GGAATGTTGGCTGGCTCGAGG 	22
------------------------------------------------------------------TGTCGGACCAGGCTTCATTCC 	1
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCTC 	1
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCCT 	9
-------------------------------------------------------------------GTCGGACCAGGCTTCATTCC 	6
-------------------------------------------------------------------GTCGGACCAGGCTTCATTC 	1
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCTC 	1
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCT 	99
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	35759
--------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	350
--------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	3510
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTCT 	3
---------------------------------------------------------------------CGGACCAGGCTTCATTCCTC 	89
---------------------------------------------------------------------CGGACCAGGCTTCATTCCT 	4
----------------------------------------------------------------------GGACCAGGCTTCATTCCTC 	72



HuntMi prediction: true miRNA