miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGTGGGACTTTCGTTCGTTT

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TCGGTGGGACTTTCGTTCGTTT GGACGGACGAAGGTTTCATCAATC down 1 2


Secondary structure

TCGAGTGCGCCACGGACGGACGAAGGTTTCATCAATCGTGTTACAGATAAACGTGTCGGTCGGTGGGACTTTCGTTCGTTTGGATCGCTCT
---------------ACGGACGAAGGTTTCATCAATCGT 	2
---------------ACGGACGAAGGTTTCATCAATCG 	19
---------------ACGGACGAAGGTTTCATCAATC 	18
---------------ACGGACGAAGGTTTCATCAAT 	3
---------------ACGGACGAAGGTTTCATCAA 	2
----------------CGGACGAAGGTTTCATCAATC 	1
-------------------------------------GTGTTACAGATAAACGTGTCGG 	1
----------------------------------------------------------GTCGGTGGGACTTTCGTTCGTTT 	3
----------------------------------------------------------GTCGGTGGGACTTTCGTTCGTT 	2
-----------------------------------------------------------TCGGTGGGACTTTCGTTCGTTT 	87
-----------------------------------------------------------TCGGTGGGACTTTCGTTCGTT 	27
-----------------------------------------------------------TCGGTGGGACTTTCGTTCGT 	12
-----------------------------------------------------------TCGGTGGGACTTTCGTTCG 	2

Overlaps with: MNEST035078
Overlaps with miRBase pre-miRNAs: api-mir-278
HuntMi prediction: true miRNA