miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGGTGGGATCTTCGTCCGTTT

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean TCGGTGGGATCTTCGTCCGTTT CCGGACGAACTTCCCAGCTCGGCC down 4 2


Secondary structure

AGAAGAAAGAAGAACAGTATCAAGTGCTACGCCCGGACGAACTTCCCAGCTCGGCCGACAATCAGGGGTCGGTGGGATCTTCGTCCGTTTGTATCGCTTATACGAATATTCAACACCGT
-------------------------------CCCGGACGAACTTCCCAGCTCGG 	1
--------------------------------CCGGACGAACTTCCCAGCTCGGC 	8
--------------------------------CCGGACGAACTTCCCAGCTCGG 	8
--------------------------------CCGGACGAACTTCCCAGCTCGGCC 	4
---------------------------------CGGACGAACTTCCCAGCTCGGCC 	1
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGTTT 	280
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGTT 	73
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGT 	12
---------------------------------------------------------------------CGGTGGGATCTTCGTCCGTTT 	1
---------------------------------------------------------------------CGGTGGGATCTTCGTCCGTT 	1


Overlaps with: MNEST035551
Overlaps with miRBase pre-miRNAs: bmo-mir-278
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean TCGGTGGGATCTTCGTCCGTTT CCGGACGAACTTCCCAGCTCGGCC down 4 2


Secondary structure

AGAAGAAAGAAGAACAGTATCAAGTGCTACGCCCGGACGAACTTCCCAGCTCGGCCGACAATCAGGGGTCGGTGGGATCTTCGTCCGTTTGTATCGCTTATACGAATATTCAACACCGT
-----------------------------CGCCCGGACGAACTTCCCAGCTCGGC 	1
-----------------------------CGCCCGGACGAACTTCCCAGC 	1
------------------------------GCCCGGACGAACTTCCCAGCTCGG 	13
------------------------------GCCCGGACGAACTTCCCAGCTCGGC 	10
------------------------------GCCCGGACGAACTTCCCAGCTCGGCC 	4
-------------------------------CCCGGACGAACTTCCCAGCTCGGC 	131
-------------------------------CCCGGACGAACTTCCCAGCTCGG 	136
-------------------------------CCCGGACGAACTTCCCAGCTC 	5
-------------------------------CCCGGACGAACTTCCCAGC 	2
-------------------------------CCCGGACGAACTTCCCAGCT 	2
-------------------------------CCCGGACGAACTTCCCAGCTCG 	2
--------------------------------CCGGACGAACTTCCCAGCTCGGCC 	925
--------------------------------CCGGACGAACTTCCCAGCTCGGC 	427
--------------------------------CCGGACGAACTTCCCAGCTCGG 	908
--------------------------------CCGGACGAACTTCCCAGCTCG 	9
--------------------------------CCGGACGAACTTCCCAGCTC 	8
--------------------------------CCGGACGAACTTCCCAGCT 	1
---------------------------------CGGACGAACTTCCCAGCTCGGCC 	277
---------------------------------CGGACGAACTTCCCAGCTCGGC 	34
---------------------------------CGGACGAACTTCCCAGCTCGG 	25
----------------------------------GGACGAACTTCCCAGCTCGGCC 	15
----------------------------------GGACGAACTTCCCAGCTCGG 	3
----------------------------------GGACGAACTTCCCAGCTCGGC 	2
------------------------------------ACGAACTTCCCAGCTCGGCC 	1
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGTTT 	3901
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGTT 	1085
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGT 	189
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCG 	34
--------------------------------------------------------------------TCGGTGGGATCTTCGTCCGTTTG 	9
---------------------------------------------------------------------CGGTGGGATCTTCGTCCGTTT 	28
---------------------------------------------------------------------CGGTGGGATCTTCGTCCGTTTG 	8
---------------------------------------------------------------------CGGTGGGATCTTCGTCCGTT 	2
---------------------------------------------------------------------CGGTGGGATCTTCGTCCGT 	1
----------------------------------------------------------------------GGTGGGATCTTCGTCCGTTT 	71
----------------------------------------------------------------------GGTGGGATCTTCGTCCGTT 	11


Overlaps with: MNEST035551
Overlaps with miRBase pre-miRNAs: bmo-mir-278
HuntMi prediction: true miRNA