miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGTACCGTGAGTAATAATGC

selected species: Danio rerio



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TCGTACCGTGAGTAATAATGC ATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CATTTTAACTGCTTCACAGTCCATTATTACTTTTGGTACGCGCTAGGCCAGACTCAAACTCGTACCGTGAGTAATAATGCACTGTGGCAGTGGGTTTAT
---------------------CATTATTACTTTTGGTACGCGCT 	2
---------------------CATTATTACTTTTGGTACGCG 	392
---------------------CATTATTACTTTTGGTACGC 	36
---------------------CATTATTACTTTTGGTACGCGC 	45
----------------------ATTATTACTTTTGGTACGCGCT 	3
----------------------ATTATTACTTTTGGTACGCGC 	2
----------------------ATTATTACTTTTGGTACGCG 	6
-----------------------TTATTACTTTTGGTACGCGCT 	6
----------------------------------------------------------CTCGTACCGTGAGTAATAATGC 	248
----------------------------------------------------------CTCGTACCGTGAGTAATAATGCA 	10
-----------------------------------------------------------TCGTACCGTGAGTAATAATGCA 	801
-----------------------------------------------------------TCGTACCGTGAGTAATAATGC 	918
-----------------------------------------------------------TCGTACCGTGAGTAATAATG 	16
------------------------------------------------------------CGTACCGTGAGTAATAATGC 	97
------------------------------------------------------------CGTACCGTGAGTAATAATGCA 	136
-------------------------------------------------------------GTACCGTGAGTAATAATGC 	1
-------------------------------------------------------------GTACCGTGAGTAATAATGCA 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TCGTACCGTGAGTAATAATGCA CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCATTTTAACTGCTTCACAGTCCATTATTACTTTTGGTACGCGCTAGGCCAGACTCAAACTCGTACCGTGAGTAATAATGCACTGTGGCAGTGGGTTTATC
----------------------CATTATTACTTTTGGTACGCGCT 	2
----------------------CATTATTACTTTTGGTACGCGC 	3
----------------------CATTATTACTTTTGGTACGCG 	49
-----------------------ATTATTACTTTTGGTACGCGCT 	1
-----------------------ATTATTACTTTTGGTACGCG 	1
------------------------TTATTACTTTTGGTACGCGCT 	5
-----------------------------------------------------------CTCGTACCGTGAGTAATAATGC 	37
-----------------------------------------------------------CTCGTACCGTGAGTAATAATGCA 	5
-----------------------------------------------------------CTCGTACCGTGAGTAATAATG 	2
------------------------------------------------------------TCGTACCGTGAGTAATAATGCA 	485
------------------------------------------------------------TCGTACCGTGAGTAATAATGC 	42
------------------------------------------------------------TCGTACCGTGAGTAATAATG 	3
-------------------------------------------------------------CGTACCGTGAGTAATAATGC 	13
-------------------------------------------------------------CGTACCGTGAGTAATAATGCA 	54
--------------------------------------------------------------GTACCGTGAGTAATAATGCA 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 TCGTACCGTGAGTAATAATGCA CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCATTTTAACTGCTTCACAGTCCATTATTACTTTTGGTACGCGCTAGGCCAGACTCAAACTCGTACCGTGAGTAATAATGCACTGTGGCAGTGGGTTTATC
---------------------CCATTATTACTTTTGGTACGCG 	1
----------------------CATTATTACTTTTGGTACGCGCT 	39
----------------------CATTATTACTTTTGGTACGCG 	1351
----------------------CATTATTACTTTTGGTACGC 	57
----------------------CATTATTACTTTTGGTACGCGC 	457
-----------------------ATTATTACTTTTGGTACGCG 	5
-----------------------ATTATTACTTTTGGTACGCGCT 	5
-----------------------ATTATTACTTTTGGTACGCGC 	19
------------------------TTATTACTTTTGGTACGCGCT 	7
-----------------------------------------------------------CTCGTACCGTGAGTAATAATGC 	3600
-----------------------------------------------------------CTCGTACCGTGAGTAATAATG 	9
-----------------------------------------------------------CTCGTACCGTGAGTAATAAT 	2
-----------------------------------------------------------CTCGTACCGTGAGTAATAATGCA 	221
------------------------------------------------------------TCGTACCGTGAGTAATAATGCA 	7793
------------------------------------------------------------TCGTACCGTGAGTAATAATGCAC 	13
------------------------------------------------------------TCGTACCGTGAGTAATAATGC 	3782
------------------------------------------------------------TCGTACCGTGAGTAATAATG 	28
-------------------------------------------------------------CGTACCGTGAGTAATAATG 	1
-------------------------------------------------------------CGTACCGTGAGTAATAATGCAC 	22
-------------------------------------------------------------CGTACCGTGAGTAATAATGC 	227
-------------------------------------------------------------CGTACCGTGAGTAATAATGCA 	634
--------------------------------------------------------------GTACCGTGAGTAATAATGC 	2
--------------------------------------------------------------GTACCGTGAGTAATAATGCA 	5
---------------------------------------------------------------TACCGTGAGTAATAATGCA 	1



HuntMi prediction: true miRNA