miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGTACCGTGAGTAATAATGCG

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TCGTACCGTGAGTAATAATGCG CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGCA
----------CACATTATTACTTTTGGTACGCG 	1
-----------ACATTATTACTTTTGGTACGC 	1
-----------ACATTATTACTTTTGGTACGCG 	3
------------CATTATTACTTTTGGTACG 	36
------------CATTATTACTTTTGGTACGCGCT 	5
------------CATTATTACTTTTGGTACGCG 	3900
------------CATTATTACTTTTGGTACGCGC 	67
------------CATTATTACTTTTGGTACGC 	1249
-------------ATTATTACTTTTGGTACGC 	52
-------------ATTATTACTTTTGGTACGCGCT 	1
-------------ATTATTACTTTTGGTACGCGC 	4
-------------ATTATTACTTTTGGTACGCG 	109
--------------TTATTACTTTTGGTACGCGC 	1
--------------TTATTACTTTTGGTACGCG 	4
------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	195
------------------------------------------------CTCGTACCGTGAGTAATAAT 	1
------------------------------------------------CTCGTACCGTGAGTAATAATG 	11
------------------------------------------------CTCGTACCGTGAGTAATAATGC 	390
-------------------------------------------------TCGTACCGTGAGTAATAATGCG 	16017
-------------------------------------------------TCGTACCGTGAGTAATAAT 	11
-------------------------------------------------TCGTACCGTGAGTAATAATG 	348
-------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	19
-------------------------------------------------TCGTACCGTGAGTAATAATGC 	3409
--------------------------------------------------CGTACCGTGAGTAATAATGCGC 	13
--------------------------------------------------CGTACCGTGAGTAATAATGCG 	3427
--------------------------------------------------CGTACCGTGAGTAATAATG 	36
--------------------------------------------------CGTACCGTGAGTAATAATGC 	632
---------------------------------------------------GTACCGTGAGTAATAATGCGC 	2
---------------------------------------------------GTACCGTGAGTAATAATGCG 	695
---------------------------------------------------GTACCGTGAGTAATAATGC 	51
----------------------------------------------------TACCGTGAGTAATAATGCG 	26


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TCGTACCGTGAGTAATAATGCG CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGCA
------------CATTATTACTTTTGGTACGCGC 	32
------------CATTATTACTTTTGGTACGCGCT 	7
------------CATTATTACTTTTGGTACG 	14
------------CATTATTACTTTTGGTACGCG 	1903
------------CATTATTACTTTTGGTACGC 	658
-------------ATTATTACTTTTGGTACGCGC 	3
-------------ATTATTACTTTTGGTACGCG 	53
-------------ATTATTACTTTTGGTACGC 	20
------------------------------------------------CTCGTACCGTGAGTAATAATGC 	196
------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	86
------------------------------------------------CTCGTACCGTGAGTAATAAT 	1
------------------------------------------------CTCGTACCGTGAGTAATAATG 	3
-------------------------------------------------TCGTACCGTGAGTAATAATG 	159
-------------------------------------------------TCGTACCGTGAGTAATAAT 	4
-------------------------------------------------TCGTACCGTGAGTAATAATGCG 	8370
-------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	8
-------------------------------------------------TCGTACCGTGAGTAATAATGC 	1661
--------------------------------------------------CGTACCGTGAGTAATAATGCGC 	7
--------------------------------------------------CGTACCGTGAGTAATAATGC 	266
--------------------------------------------------CGTACCGTGAGTAATAATG 	19
--------------------------------------------------CGTACCGTGAGTAATAATGCG 	1820
---------------------------------------------------GTACCGTGAGTAATAATGCGC 	2
---------------------------------------------------GTACCGTGAGTAATAATGCG 	291
---------------------------------------------------GTACCGTGAGTAATAATGC 	25
----------------------------------------------------TACCGTGAGTAATAATGCG 	6


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 TCGTACCGTGAGTAATAATGCG CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGCA
-----------ACATTATTACTTTTGGTACGCG 	1
------------CATTATTACTTTTGGTACGCGCT 	4
------------CATTATTACTTTTGGTACGCGC 	69
------------CATTATTACTTTTGGTACG 	35
------------CATTATTACTTTTGGTACGCG 	3911
------------CATTATTACTTTTGGTACGC 	1062
-------------ATTATTACTTTTGGTACGCGC 	4
-------------ATTATTACTTTTGGTACGCG 	126
-------------ATTATTACTTTTGGTACGC 	35
------------------------------------------------CTCGTACCGTGAGTAATAATGC 	479
------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	217
------------------------------------------------CTCGTACCGTGAGTAATAATG 	6
-------------------------------------------------TCGTACCGTGAGTAATAATG 	393
-------------------------------------------------TCGTACCGTGAGTAATAAT 	8
-------------------------------------------------TCGTACCGTGAGTAATAATGCG 	21174
-------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	16
-------------------------------------------------TCGTACCGTGAGTAATAATGC 	4106
--------------------------------------------------CGTACCGTGAGTAATAATG 	34
--------------------------------------------------CGTACCGTGAGTAATAATGCGC 	15
--------------------------------------------------CGTACCGTGAGTAATAATGC 	688
--------------------------------------------------CGTACCGTGAGTAATAATGCG 	3883
---------------------------------------------------GTACCGTGAGTAATAATGCGC 	1
---------------------------------------------------GTACCGTGAGTAATAATGCG 	934
---------------------------------------------------GTACCGTGAGTAATAATGC 	77
----------------------------------------------------TACCGTGAGTAATAATGCG 	11


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 TCGTACCGTGAGTAATAATGCG CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGCA
-----------ACATTATTACTTTTGGTACGC 	1
-----------ACATTATTACTTTTGGTACGCG 	3
------------CATTATTACTTTTGGTACG 	125
------------CATTATTACTTTTGGTACGCGCT 	28
------------CATTATTACTTTTGGTACGCG 	11807
------------CATTATTACTTTTGGTACGCGC 	201
------------CATTATTACTTTTGGTACGC 	3473
-------------ATTATTACTTTTGGTACGCG 	211
-------------ATTATTACTTTTGGTACGC 	74
-------------ATTATTACTTTTGGTACGCGCT 	2
-------------ATTATTACTTTTGGTACGCGC 	8
--------------TTATTACTTTTGGTACGCG 	1
------------------------------------------------CTCGTACCGTGAGTAATAATG 	6
------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	300
------------------------------------------------CTCGTACCGTGAGTAATAATGC 	683
-------------------------------------------------TCGTACCGTGAGTAATAATGCG 	33073
-------------------------------------------------TCGTACCGTGAGTAATAAT 	18
-------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	18
-------------------------------------------------TCGTACCGTGAGTAATAATGC 	7146
-------------------------------------------------TCGTACCGTGAGTAATAATG 	686
--------------------------------------------------CGTACCGTGAGTAATAATGCGC 	17
--------------------------------------------------CGTACCGTGAGTAATAATGCG 	6795
--------------------------------------------------CGTACCGTGAGTAATAATGC 	1066
--------------------------------------------------CGTACCGTGAGTAATAATG 	61
---------------------------------------------------GTACCGTGAGTAATAATGCGC 	3
---------------------------------------------------GTACCGTGAGTAATAATGCG 	2005
---------------------------------------------------GTACCGTGAGTAATAATGC 	154
----------------------------------------------------TACCGTGAGTAATAATGCG 	49


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527279-2112 TCGTACCGTGAGTAATAATGCG CATTATTACTTTTGGTACGCGC down 3 0


Secondary structure

CCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGCA
-----------ACATTATTACTTTTGGTACGCG 	2
------------CATTATTACTTTTGGTACG 	59
------------CATTATTACTTTTGGTACGCGCT 	8
------------CATTATTACTTTTGGTACGCG 	5308
------------CATTATTACTTTTGGTACGCGC 	112
------------CATTATTACTTTTGGTACGC 	2211
-------------ATTATTACTTTTGGTACGC 	65
-------------ATTATTACTTTTGGTACGCGCT 	1
-------------ATTATTACTTTTGGTACGCGC 	7
-------------ATTATTACTTTTGGTACGCG 	142
--------------TTATTACTTTTGGTACGCGC 	1
--------------TTATTACTTTTGGTACGCG 	4
------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	204
------------------------------------------------CTCGTACCGTGAGTAATAATG 	9
------------------------------------------------CTCGTACCGTGAGTAATAAT 	1
------------------------------------------------CTCGTACCGTGAGTAATAATGC 	549
-------------------------------------------------TCGTACCGTGAGTAATAATGCG 	24021
-------------------------------------------------TCGTACCGTGAGTAATAAT 	9
-------------------------------------------------TCGTACCGTGAGTAATAATG 	362
-------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	28
-------------------------------------------------TCGTACCGTGAGTAATAATGC 	5419
--------------------------------------------------CGTACCGTGAGTAATAATGCGC 	18
--------------------------------------------------CGTACCGTGAGTAATAATGCG 	6255
--------------------------------------------------CGTACCGTGAGTAATAATGC 	1011
--------------------------------------------------CGTACCGTGAGTAATAATG 	45
---------------------------------------------------GTACCGTGAGTAATAATGCG 	808
---------------------------------------------------GTACCGTGAGTAATAATGC 	95
----------------------------------------------------TACCGTGAGTAATAATGCG 	25


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA