miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCGTACCGTGAGTAATAATGCG

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TCGTACCGTGAGTAATAATGCG GGACATTATTACTTTTGGTACGCGC down 2 3


Secondary structure

GCTGGCGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCGGCA
-------------CATTATTACTTTTGGTACGCGCT 	2
-------------CATTATTACTTTTGGTACGCG 	1434
-------------CATTATTACTTTTGGTACGCGC 	113
-------------CATTATTACTTTTGGTACGC 	1428
-------------CATTATTACTTTTGGTACG 	94
--------------ATTATTACTTTTGGTACGCGCT 	1
--------------ATTATTACTTTTGGTACGCG 	14
--------------ATTATTACTTTTGGTACGCGC 	2
--------------ATTATTACTTTTGGTACGC 	12
-------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	669
-------------------------------------------------CTCGTACCGTGAGTAATAATG 	112
-------------------------------------------------CTCGTACCGTGAGTAATAAT 	64
-------------------------------------------------CTCGTACCGTGAGTAATAATGC 	840
-------------------------------------------------CTCGTACCGTGAGTAATAA 	5
--------------------------------------------------TCGTACCGTGAGTAATAATGCG 	15163
--------------------------------------------------TCGTACCGTGAGTAATAATGC 	9256
--------------------------------------------------TCGTACCGTGAGTAATAATG 	1482
--------------------------------------------------TCGTACCGTGAGTAATAAT 	535
--------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	7
---------------------------------------------------CGTACCGTGAGTAATAATGCGC 	5
---------------------------------------------------CGTACCGTGAGTAATAATGCG 	2213
---------------------------------------------------CGTACCGTGAGTAATAATGC 	603
---------------------------------------------------CGTACCGTGAGTAATAATG 	121
----------------------------------------------------GTACCGTGAGTAATAATGCG 	152
----------------------------------------------------GTACCGTGAGTAATAATGC 	46
-----------------------------------------------------TACCGTGAGTAATAATGCG 	1


Overlaps with: MNEST033973
Overlaps with miRBase pre-miRNAs: ssc-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TCGTACCGTGAGTAATAATGCG GGACATTATTACTTTTGGTACGCGC down 2 3


Secondary structure

GCTGGCGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCGGCA
-------------CATTATTACTTTTGGTACGCGCT 	4
-------------CATTATTACTTTTGGTACGCG 	1188
-------------CATTATTACTTTTGGTACGCGC 	105
-------------CATTATTACTTTTGGTACGC 	1152
-------------CATTATTACTTTTGGTACG 	76
--------------ATTATTACTTTTGGTACGCGCT 	3
--------------ATTATTACTTTTGGTACGCG 	10
--------------ATTATTACTTTTGGTACGCGC 	1
--------------ATTATTACTTTTGGTACGC 	13
---------------TTATTACTTTTGGTACGCG 	1
-------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	701
-------------------------------------------------CTCGTACCGTGAGTAATAATG 	86
-------------------------------------------------CTCGTACCGTGAGTAATAAT 	21
-------------------------------------------------CTCGTACCGTGAGTAATAA 	2
-------------------------------------------------CTCGTACCGTGAGTAATAATGC 	902
--------------------------------------------------TCGTACCGTGAGTAATAATG 	1090
--------------------------------------------------TCGTACCGTGAGTAATAATGCG 	14296
--------------------------------------------------TCGTACCGTGAGTAATAAT 	206
--------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	4
--------------------------------------------------TCGTACCGTGAGTAATAATGC 	8517
---------------------------------------------------CGTACCGTGAGTAATAATGCGC 	2
---------------------------------------------------CGTACCGTGAGTAATAATGCG 	2296
---------------------------------------------------CGTACCGTGAGTAATAATG 	60
---------------------------------------------------CGTACCGTGAGTAATAATGC 	478
----------------------------------------------------GTACCGTGAGTAATAATGCG 	148
----------------------------------------------------GTACCGTGAGTAATAATGC 	36


Overlaps with: MNEST033973
Overlaps with miRBase pre-miRNAs: ssc-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TCGTACCGTGAGTAATAATGCG GGACATTATTACTTTTGGTACGCGC down 2 3


Secondary structure

GCTGGCGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCGGCA
-------------CATTATTACTTTTGGTACGCG 	218
-------------CATTATTACTTTTGGTACGC 	216
-------------CATTATTACTTTTGGTACG 	22
-------------CATTATTACTTTTGGTACGCGC 	11
--------------ATTATTACTTTTGGTACGCG 	2
--------------ATTATTACTTTTGGTACGC 	4
-------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	148
-------------------------------------------------CTCGTACCGTGAGTAATAATGC 	216
-------------------------------------------------CTCGTACCGTGAGTAATAATG 	20
-------------------------------------------------CTCGTACCGTGAGTAATAAT 	5
--------------------------------------------------TCGTACCGTGAGTAATAATGCG 	3904
--------------------------------------------------TCGTACCGTGAGTAATAATG 	469
--------------------------------------------------TCGTACCGTGAGTAATAAT 	58
--------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	1
--------------------------------------------------TCGTACCGTGAGTAATAATGC 	2339
---------------------------------------------------CGTACCGTGAGTAATAATGCG 	431
---------------------------------------------------CGTACCGTGAGTAATAATGC 	117
---------------------------------------------------CGTACCGTGAGTAATAATG 	29
----------------------------------------------------GTACCGTGAGTAATAATGCG 	60
----------------------------------------------------GTACCGTGAGTAATAATGC 	9


Overlaps with: MNEST033973
Overlaps with miRBase pre-miRNAs: ssc-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TCGTACCGTGAGTAATAATGCG GGACATTATTACTTTTGGTACGCGC down 2 3


Secondary structure

GCTGGCGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCGGCA
------------ACATTATTACTTTTGGTACGCG 	2
------------ACATTATTACTTTTGGTACGC 	1
-------------CATTATTACTTTTGGTACGCGCT 	19
-------------CATTATTACTTTTGGTACGCG 	3731
-------------CATTATTACTTTTGGTACGCGC 	193
-------------CATTATTACTTTTGGTACGC 	2370
-------------CATTATTACTTTTGGTACG 	204
--------------ATTATTACTTTTGGTACGCG 	57
--------------ATTATTACTTTTGGTACGCGCT 	4
--------------ATTATTACTTTTGGTACGCGC 	8
--------------ATTATTACTTTTGGTACGC 	29
---------------TTATTACTTTTGGTACGCGCT 	1
-------------------------------------------------CTCGTACCGTGAGTAATAATG 	140
-------------------------------------------------CTCGTACCGTGAGTAATAA 	5
-------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	1472
-------------------------------------------------CTCGTACCGTGAGTAATAAT 	51
-------------------------------------------------CTCGTACCGTGAGTAATAATGC 	1299
--------------------------------------------------TCGTACCGTGAGTAATAAT 	544
--------------------------------------------------TCGTACCGTGAGTAATAATGC 	14901
--------------------------------------------------TCGTACCGTGAGTAATAATGCG 	30237
--------------------------------------------------TCGTACCGTGAGTAATAATG 	1684
--------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	21
---------------------------------------------------CGTACCGTGAGTAATAATGCG 	6375
---------------------------------------------------CGTACCGTGAGTAATAATGC 	1070
---------------------------------------------------CGTACCGTGAGTAATAATGCGC 	9
---------------------------------------------------CGTACCGTGAGTAATAATG 	143
----------------------------------------------------GTACCGTGAGTAATAATGC 	99
----------------------------------------------------GTACCGTGAGTAATAATGCG 	359


Overlaps with: MNEST033973
Overlaps with miRBase pre-miRNAs: ssc-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TCGTACCGTGAGTAATAATGCG GGACATTATTACTTTTGGTACGCGC down 2 3


Secondary structure

GCTGGCGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCGGCA
-------------CATTATTACTTTTGGTACGCGCT 	1
-------------CATTATTACTTTTGGTACGCG 	197
-------------CATTATTACTTTTGGTACGC 	221
-------------CATTATTACTTTTGGTACG 	25
-------------CATTATTACTTTTGGTACGCGC 	18
--------------ATTATTACTTTTGGTACGCG 	2
--------------ATTATTACTTTTGGTACGCGC 	1
--------------ATTATTACTTTTGGTACGC 	3
-------------------------------------------------CTCGTACCGTGAGTAATAATGCG 	94
-------------------------------------------------CTCGTACCGTGAGTAATAATGC 	154
-------------------------------------------------CTCGTACCGTGAGTAATAATG 	8
-------------------------------------------------CTCGTACCGTGAGTAATAAT 	5
-------------------------------------------------CTCGTACCGTGAGTAATAA 	1
--------------------------------------------------TCGTACCGTGAGTAATAATGCG 	2962
--------------------------------------------------TCGTACCGTGAGTAATAATG 	336
--------------------------------------------------TCGTACCGTGAGTAATAAT 	28
--------------------------------------------------TCGTACCGTGAGTAATAATGCGC 	1
--------------------------------------------------TCGTACCGTGAGTAATAATGC 	1907
---------------------------------------------------CGTACCGTGAGTAATAATGCGC 	1
---------------------------------------------------CGTACCGTGAGTAATAATGCG 	312
---------------------------------------------------CGTACCGTGAGTAATAATGC 	80
---------------------------------------------------CGTACCGTGAGTAATAATG 	13
----------------------------------------------------GTACCGTGAGTAATAATGCG 	38
----------------------------------------------------GTACCGTGAGTAATAATGC 	11


Overlaps with: MNEST033973
Overlaps with miRBase pre-miRNAs: ssc-mir-126 cfa-mir-126
HuntMi prediction: true miRNA