miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTAGCAGCTGTTGAGCAGGT

selected species: Arabidopsis thaliana



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TCTAGCAGCTGTTGAGCAGGT CTGCATAACAGCTACGAGGAA down 4 0


Secondary structure

CAAGAAAAATTCTTCAAGATATCAGATATTTCACGAAGATATCTGCATAACAGCTACGAGGAAATTGTGATTTTATCGTTTCACAAACATCAACAGCTCCATGGATCGTTATGGACGGATAAATCACAATCACTATCCTTTTTCTAGCAGCTGTTGAGCAGGTTTCTTCGTGAATATCTGGCATTTTGGTGGATTTTACAGT
-----------------------------TTCACGAAGATATCTGCATA 	1
---------------------------------CGAAGATATCTGCATAACAGC 	1
-----------------------------------------TCTGCATAACAGCTACGAGGA 	5
------------------------------------------CTGCATAACAGCTACGAGGAAA 	3
------------------------------------------CTGCATAACAGCTACGAGGAA 	23
-------------------------------------------TGCATAACAGCTACGAGGAAA 	38
-------------------------------------------TGCATAACAGCTACGAGGAA 	10
---------------------------------------------------------------------------------------------------------------------------------------------TTCTAGCAGCTGTTGAGCAGG 	3
----------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGTTTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGTTT 	4
----------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGTT 	11
----------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGT 	268
----------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGG 	6
----------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAG 	2
-----------------------------------------------------------------------------------------------------------------------------------------------CTAGCAGCTGTTGAGCAGGTT 	1
------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGCTGTTGAGCAGGTTTC 	6
------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGCTGTTGAGCAGGTTT 	1
------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGCTGTTGAGCAGGT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCAT 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCAT 	48
------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATTTT 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATTT 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATT 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCAT 	232
-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCA 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGTGAATATCTGGCATT 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGTGAATATCTGGCAT 	4


Overlaps with: MNEST040135 MNEST040136
Overlaps with miRBase pre-miRNAs: ath-MIR780
HuntMi prediction: true miRNA