miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCTCACATTTACATATTCACAG

selected species: Drosophila melanogaster

14 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	3
-------------GTGGGTATCTGGATGTGGTTGG 	3
-----------------------------------------------TCTCACATTTACATATTCACA 	174
-----------------------------------------------TCTCACATTTACATATTCA 	7
-----------------------------------------------TCTCACATTTACATATTCAC 	66
-----------------------------------------------TCTCACATTTACATATTCACAG 	324
------------------------------------------------CTCACATTTACATATTCACAG 	2
------------------------------------------------CTCACATTTACATATTCACA 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGG 	4
-------------GTGGGTATCTGGATGTGGTTG 	1
-----------------------------------------------TCTCACATTTACATATTCAC 	16
-----------------------------------------------TCTCACATTTACATATTCACA 	135
-----------------------------------------------TCTCACATTTACATATTCA 	4
-----------------------------------------------TCTCACATTTACATATTCACAG 	348
------------------------------------------------CTCACATTTACATATTCACA 	1
------------------------------------------------CTCACATTTACATATTCAC 	1
------------------------------------------------CTCACATTTACATATTCACAG 	2

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399105-16286	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	5
-------------GTGGGTATCTGGATGTGGTTGGCTC 	1
-------------GTGGGTATCTGGATGTGGTTGG 	9
-----------------------------------------------TCTCACATTTACATATTCACA 	71
-----------------------------------------------TCTCACATTTACATATTCAC 	11
-----------------------------------------------TCTCACATTTACATATTCACAG 	351
------------------------------------------------CTCACATTTACATATTCACAG 	2

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM360262-14327	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	9
-------------GTGGGTATCTGGATGTGGTTGG 	29
-----------------------------------------------TCTCACATTTACATATTCACA 	227
-----------------------------------------------TCTCACATTTACATATTCA 	3
-----------------------------------------------TCTCACATTTACATATTCAC 	39
-----------------------------------------------TCTCACATTTACATATTCACAG 	377
------------------------------------------------CTCACATTTACATATTCACAG 	7
------------------------------------------------CTCACATTTACATATTCACA 	2
------------------------------------------------CTCACATTTACATATTCAC 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM385822-16273	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGGC 	1
----------------------------------------------CTCTCACATTTACATATTCACAG 	1
----------------------------------------------CTCTCACATTTACATATTCACA 	1
-----------------------------------------------TCTCACATTTACATATTCA 	13
-----------------------------------------------TCTCACATTTACATATTCACAG 	389
-----------------------------------------------TCTCACATTTACATATTCAC 	75
-----------------------------------------------TCTCACATTTACATATTCACA 	221
------------------------------------------------CTCACATTTACATATTCACA 	1
------------------------------------------------CTCACATTTACATATTCACAG 	4
-------------------------------------------------TCACATTTACATATTCACAG 	2
-------------------------------------------------TCACATTTACATATTCACA 	1
--------------------------------------------------CACATTTACATATTCACAG 	2

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360256-14324	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGG 	5
-----------------------------------------------TCTCACATTTACATATTCACA 	5
-----------------------------------------------TCTCACATTTACATATTCAC 	2
-----------------------------------------------TCTCACATTTACATATTCACAG 	14

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM286605-9793	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGG 	29
-------------GTGGGTATCTGGATGTGGTTG 	16
-----------------------------------------------TCTCACATTTACATATTCAC 	8
-----------------------------------------------TCTCACATTTACATATTCACA 	85
-----------------------------------------------TCTCACATTTACATATTCA 	1
-----------------------------------------------TCTCACATTTACATATTCACAG 	196

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM360260-14326	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	4
-------------GTGGGTATCTGGATGTGGTTGG 	7
-------------GTGGGTATCTGGATGTGGTT 	2
-----------------------------------------------TCTCACATTTACATATTCACA 	199
-----------------------------------------------TCTCACATTTACATATTCA 	3
-----------------------------------------------TCTCACATTTACATATTCAC 	28
-----------------------------------------------TCTCACATTTACATATTCACAG 	303
------------------------------------------------CTCACATTTACATATTCACAG 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM286607-9796	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	33
-------------GTGGGTATCTGGATGTGGTTGG 	61
----------------------------------GCTCTGGCGGTCCTCTCACATTTAC 	3
-----------------------------------------------TCTCACATTTACATATTCACA 	77
-----------------------------------------------TCTCACATTTACATATTCA 	5
-----------------------------------------------TCTCACATTTACATATTCAC 	6
-----------------------------------------------TCTCACATTTACATATTCACAG 	120

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM286604-9792	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	4
-------------GTGGGTATCTGGATGTGGTTGG 	2
-------------GTGGGTATCTGGATGTGGTT 	1
-----------------------------------------------TCTCACATTTACATATTCACA 	215
-----------------------------------------------TCTCACATTTACATATTCA 	5
-----------------------------------------------TCTCACATTTACATATTCAC 	46
-----------------------------------------------TCTCACATTTACATATTCACAG 	572
------------------------------------------------CTCACATTTACATATTCACAG 	4

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM385744-16261	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGG 	1
-----------------------------------------------TCTCACATTTACATATTCACAGG 	1
-----------------------------------------------TCTCACATTTACATATTCA 	29
-----------------------------------------------TCTCACATTTACATATTCACAG 	475
-----------------------------------------------TCTCACATTTACATATTCAC 	131
-----------------------------------------------TCTCACATTTACATATTCACA 	313
------------------------------------------------CTCACATTTACATATTCACA 	2
------------------------------------------------CTCACATTTACATATTCACAG 	3
-------------------------------------------------TCACATTTACATATTCACAG 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM322208-14317	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGG 	4
-------------GTGGGTATCTGGATGTGGTTG 	2
-----------------------------------------------TCTCACATTTACATATTCAC 	7
-----------------------------------------------TCTCACATTTACATATTCACA 	50
-----------------------------------------------TCTCACATTTACATATTCA 	9
-----------------------------------------------TCTCACATTTACATATTCACAG 	88
------------------------------------------------CTCACATTTACATATTCACAG 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM385748-16264	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTGG 	3
----------------------------------------------CTCTCACATTTACATATTCACAG 	1
-----------------------------------------------TCTCACATTTACATATTCACAGG 	1
-----------------------------------------------TCTCACATTTACATATTCA 	66
-----------------------------------------------TCTCACATTTACATATTCACA 	637
-----------------------------------------------TCTCACATTTACATATTCACAG 	934
-----------------------------------------------TCTCACATTTACATATTCAC 	262
------------------------------------------------CTCACATTTACATATTCACA 	3
------------------------------------------------CTCACATTTACATATTCACAG 	3
-------------------------------------------------TCACATTTACATATTCACAG 	5
-------------------------------------------------TCACATTTACATATTCACA 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM399110-16285	TCTCACATTTACATATTCACAG	GTGGGTATCTGGATGTGGTTGG	down	5	0

Secondary structure

AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	57
-------------GTGGGTATCTGGATGTGGTTGG 	68
-------------GTGGGTATCTGGATGTGGTT 	4
--------------TGGGTATCTGGATGTGGTTG 	1
----------------------------------GCTCTGGCGGTCCTCTCACATTTACA 	8
-----------------------------------------------TCTCACATTTACATATTCACA 	473
-----------------------------------------------TCTCACATTTACATATTCACAGG 	1
-----------------------------------------------TCTCACATTTACATATTCA 	17
-----------------------------------------------TCTCACATTTACATATTCAC 	79
-----------------------------------------------TCTCACATTTACATATTCACAG 	626
------------------------------------------------CTCACATTTACATATTCACAG 	17
------------------------------------------------CTCACATTTACATATTCACA 	1

Overlaps with: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003
HuntMi prediction: true miRNA