miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TCTCAGGAGTAAAGACAGAGTT

selected species: Homo sapiens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM569185 TCTCAGGAGTAAAGACAGAGTT CTCTGTCTTCACTCATGAGTAC down 3 0


Secondary structure

CTGTAAACTTGAAGGTAGGGAACTCTGTCTTCACTCATGAGTACCTTCCAACACGAGCTCTCAGGAGTAAAGACAGAGTTCCCTACCTTCAATGTGGAT
---------------------------------------------------------CTCTCAGGAGTAAAGACAGAGT 	1
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTT 	17
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGT 	1
----------------------------------------------------------TCTCAGGAGTAAAGACAGAG 	2
------------------------------------------------------------TCAGGAGTAAAGACAGAGTT 	5
------------------------------------------------------------TCAGGAGTAAAGACAGAGTTC 	5
-------------------------------------------------------------CAGGAGTAAAGACAGAGTT 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCCC 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCC 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTC 	2

Overlaps with: MNEST029427 MNEST029428
Overlaps with miRBase pre-miRNAs: hsa-mir-3664
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531974 TCTCAGGAGTAAAGACAGAGTT CTCTGTCTTCACTCATGAGTAC down 3 0


Secondary structure

CTGTAAACTTGAAGGTAGGGAACTCTGTCTTCACTCATGAGTACCTTCCAACACGAGCTCTCAGGAGTAAAGACAGAGTTCCCTACCTTCAATGTGGAT
---------------------------------------------------------CTCTCAGGAGTAAAGACAGAG 	1
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTT 	11
----------------------------------------------------------TCTCAGGAGTAAAGACAGAG 	3
------------------------------------------------------------TCAGGAGTAAAGACAGAGTT 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTT 	6
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCCC 	2
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTC 	2

Overlaps with: MNEST029427 MNEST029428
Overlaps with miRBase pre-miRNAs: hsa-mir-3664
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM569186 TCTCAGGAGTAAAGACAGAGTT CTCTGTCTTCACTCATGAGTAC down 3 0


Secondary structure

CTGTAAACTTGAAGGTAGGGAACTCTGTCTTCACTCATGAGTACCTTCCAACACGAGCTCTCAGGAGTAAAGACAGAGTTCCCTACCTTCAATGTGGAT
---------------------------------------------------------CTCTCAGGAGTAAAGACAGAGT 	3
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTT 	16
----------------------------------------------------------TCTCAGGAGTAAAGACAGAG 	1
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTTC 	2
------------------------------------------------------------TCAGGAGTAAAGACAGAGTTC 	3
------------------------------------------------------------TCAGGAGTAAAGACAGAGTT 	6
-------------------------------------------------------------CAGGAGTAAAGACAGAGTT 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTC 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCCC 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCC 	1
--------------------------------------------------------------AGGAGTAAAGACAGAGTTCCCT 	1

Overlaps with: MNEST029427 MNEST029428
Overlaps with miRBase pre-miRNAs: hsa-mir-3664
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM569188 TCTCAGGAGTAAAGACAGAGTT CTCTGTCTTCACTCATGAGTAC down 3 0


Secondary structure

CTGTAAACTTGAAGGTAGGGAACTCTGTCTTCACTCATGAGTACCTTCCAACACGAGCTCTCAGGAGTAAAGACAGAGTTCCCTACCTTCAATGTGGAT
--------------------AACTCTGTCTTCACTCATGAGT 	1
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTT 	9
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGT 	3
----------------------------------------------------------TCTCAGGAGTAAAGACAGA 	1
------------------------------------------------------------TCAGGAGTAAAGACAGAGTT 	9
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTC 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTT 	2
--------------------------------------------------------------AGGAGTAAAGACAGAGTTC 	1

Overlaps with: MNEST029427 MNEST029428
Overlaps with miRBase pre-miRNAs: hsa-mir-3664
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM531982 TCTCAGGAGTAAAGACAGAGTT CTCTGTCTTCACTCATGAGTAC down 3 0


Secondary structure

CTGTAAACTTGAAGGTAGGGAACTCTGTCTTCACTCATGAGTACCTTCCAACACGAGCTCTCAGGAGTAAAGACAGAGTTCCCTACCTTCAATGTGGAT
--------------------AACTCTGTCTTCACTCATGAG 	1
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTT 	22
----------------------------------------------------------TCTCAGGAGTAAAGACAGA 	8
----------------------------------------------------------TCTCAGGAGTAAAGACAGAG 	3
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGT 	2
------------------------------------------------------------TCAGGAGTAAAGACAGAGTT 	3
------------------------------------------------------------TCAGGAGTAAAGACAGAGTTCC 	2
-------------------------------------------------------------CAGGAGTAAAGACAGAGTT 	8
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCCCT 	3
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCCC 	1
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTCC 	1
--------------------------------------------------------------AGGAGTAAAGACAGAGTTCC 	1

Overlaps with: MNEST029427 MNEST029428
Overlaps with miRBase pre-miRNAs: hsa-mir-3664
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531978 TCTCAGGAGTAAAGACAGAGTT CTCTGTCTTCACTCATGAGTAC down 3 0


Secondary structure

CTGTAAACTTGAAGGTAGGGAACTCTGTCTTCACTCATGAGTACCTTCCAACACGAGCTCTCAGGAGTAAAGACAGAGTTCCCTACCTTCAATGTGGAT
----------------------------------------------------------TCTCAGGAGTAAAGACAGAGTT 	23
------------------------------------------------------------TCAGGAGTAAAGACAGAGTT 	6
-------------------------------------------------------------CAGGAGTAAAGACAGAGTT 	13
-------------------------------------------------------------CAGGAGTAAAGACAGAGTTC 	4
--------------------------------------------------------------AGGAGTAAAGACAGAGTTC 	1

Overlaps with: MNEST029427 MNEST029428
Overlaps with miRBase pre-miRNAs: hsa-mir-3664
HuntMi prediction: true miRNA