miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TCTCATTCCATACATCGTCTGA

selected species: Glycine max

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	TCTCATTCCATACATCGTCTGA	AGAGATGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTCGCTGACGTTATCTTAACGCAATGTTTGACAGAGATGTATGGAGTGAGAGAAGGGAAATGATATTTTCCGATCCCATCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACCTAGCGTTGATTTGTTCTGCATGT
--------------------------------AGAGATGTATGGAGTGAGAGA 	941
--------------------------------AGAGATGTATGGAGTGAGAG 	61
----------------------------------AGATGTATGGAGTGAGAGAA 	27
----------------------------------AGATGTATGGAGTGAGAGA 	11
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	11
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	16
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	19
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	32236
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	258
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	69
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	54
-------------------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	22
--------------------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	68
---------------------------------------------------------------------------------------------------CATTCCATACATCGTCTGACGA 	13
---------------------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	12

Overlaps with: MNEST045317
Overlaps with miRBase pre-miRNAs: gso-MIR1507b gma-MIR1507b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	TCTCATTCCATACATCGTCTGA	AGAGGTGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTGTCTTAACGCAGTGTTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAGGGTATTTTCCGATTCTGTCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACGTATCGTTGATTGG
----------------------AGAGGTGTATGGAGTGAGAGA 	524
----------------------AGAGGTGTATGGAGTGAGAG 	27
-----------------------GAGGTGTATGGAGTGAGAGA 	10
-------------------------GGTGTATGGAGTGAGAGAAG 	10
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	11
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	16
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	19
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	32236
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	258
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	69
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	54
---------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	22
----------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	68
-----------------------------------------------------------------------------------------CATTCCATACATCGTCTGACGA 	13
-----------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	12

Overlaps with: MNEST003423
Overlaps with miRBase pre-miRNAs: gma-MIR1507a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543394	TCTCATTCCATACATCGTCTGA	AGAGATGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTCGCTGACGTTATCTTAACGCAATGTTTGACAGAGATGTATGGAGTGAGAGAAGGGAAATGATATTTTCCGATCCCATCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACCTAGCGTTGATTTGTTCTGCATGT
--------------------------------AGAGATGTATGGAGTGAGAGA 	262
--------------------------------AGAGATGTATGGAGTGAGAG 	30
---------------------------------GAGATGTATGGAGTGAGAGA 	5
----------------------------------------------------------------------------------------------TCTCTCATTCCATACATCGTCT 	7
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	14
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	13
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	14
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	47184
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	205
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	53
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	41
-------------------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	506
--------------------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	42
---------------------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	11

Overlaps with: MNEST045317
Overlaps with miRBase pre-miRNAs: gso-MIR1507b gma-MIR1507b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543394	TCTCATTCCATACATCGTCTGA	AGAGGTGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTGTCTTAACGCAGTGTTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAGGGTATTTTCCGATTCTGTCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACGTATCGTTGATTGG
----------------------AGAGGTGTATGGAGTGAGAGA 	567
----------------------AGAGGTGTATGGAGTGAGAG 	22
----------------------AGAGGTGTATGGAGTGAGAGAAGG 	5
-----------------------GAGGTGTATGGAGTGAGAGA 	7
------------------------AGGTGTATGGAGTGAGAGAA 	10
------------------------------------------------------------------------------------TCTCTCATTCCATACATCGTCT 	7
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	14
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	13
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	14
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	47184
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	205
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	53
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	41
---------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	506
----------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	42
-----------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	11

Overlaps with: MNEST003423
Overlaps with miRBase pre-miRNAs: gma-MIR1507a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM543393	TCTCATTCCATACATCGTCTGA	AGAGATGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTCGCTGACGTTATCTTAACGCAATGTTTGACAGAGATGTATGGAGTGAGAGAAGGGAAATGATATTTTCCGATCCCATCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACCTAGCGTTGATTTGTTCTGCATGT
--------------------------------AGAGATGTATGGAGTGAGAGA 	326
--------------------------------AGAGATGTATGGAGTGAGAG 	31
----------------------------------AGATGTATGGAGTGAGAGAAGGGAA 	12
----------------------------------AGATGTATGGAGTGAGAGAA 	8
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	9
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	6
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	15
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	52505
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	190
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	45
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	28
-------------------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	667
--------------------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	29
---------------------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	7

Overlaps with: MNEST045317
Overlaps with miRBase pre-miRNAs: gso-MIR1507b gma-MIR1507b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM543393	TCTCATTCCATACATCGTCTGA	AGAGGTGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTGTCTTAACGCAGTGTTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAGGGTATTTTCCGATTCTGTCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACGTATCGTTGATTGG
----------------------AGAGGTGTATGGAGTGAGAGA 	458
----------------------AGAGGTGTATGGAGTGAGAG 	35
-----------------------GAGGTGTATGGAGTGAGAGA 	14
------------------------AGGTGTATGGAGTGAGAGAA 	14
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	9
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	6
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	15
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	52505
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	190
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	45
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	28
---------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	667
----------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	29
-----------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	7

Overlaps with: MNEST003423
Overlaps with miRBase pre-miRNAs: gma-MIR1507a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM543395	TCTCATTCCATACATCGTCTGA	AGAGATGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTCGCTGACGTTATCTTAACGCAATGTTTGACAGAGATGTATGGAGTGAGAGAAGGGAAATGATATTTTCCGATCCCATCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACCTAGCGTTGATTTGTTCTGCATGT
--------------------------------AGAGATGTATGGAGTGAGAGA 	193
----------------------------------AGATGTATGGAGTGAGAGAA 	5
----------------------------------------------------------------------------------------------TCTCTCATTCCATACATCGTCT 	10
----------------------------------------------------------------------------------------------TCTCTCATTCCATACATCGTC 	7
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	24
-----------------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	6
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	14
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	53893
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	121
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	45
------------------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	51
-------------------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	40
--------------------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	65
---------------------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	12

Overlaps with: MNEST045317
Overlaps with miRBase pre-miRNAs: gso-MIR1507b gma-MIR1507b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543395	TCTCATTCCATACATCGTCTGA	AGAGGTGTATGGAGTGAGAGA	down	1	1

Secondary structure

TTGTCTTAACGCAGTGTTTGGCAGAGGTGTATGGAGTGAGAGAAGGGAAAGGGTATTTTCCGATTCTGTCGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACGTATCGTTGATTGG
----------------------AGAGGTGTATGGAGTGAGAGA 	284
------------------------------------------------------------------------------------TCTCTCATTCCATACATCGTCT 	10
------------------------------------------------------------------------------------TCTCTCATTCCATACATCGTC 	7
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCTGA 	24
-------------------------------------------------------------------------------------CTCTCATTCCATACATCGTCT 	6
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGAC 	14
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTGA 	53893
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCTG 	121
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTCT 	45
--------------------------------------------------------------------------------------TCTCATTCCATACATCGTC 	51
---------------------------------------------------------------------------------------CTCATTCCATACATCGTCTGA 	40
----------------------------------------------------------------------------------------TCATTCCATACATCGTCTGA 	65
-----------------------------------------------------------------------------------------CATTCCATACATCGTCTGA 	12

Overlaps with: MNEST003423
Overlaps with miRBase pre-miRNAs: gma-MIR1507a
HuntMi prediction: true miRNA