miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTCGGACCAGGCTTCATTCC

selected species: Brachypodium distachyon



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506621-23192 TCTCGGACCAGGCTTCATTCC AATGGAGGCTGATCCAAGATC down 3 0


Secondary structure

GAGAGGGAAGCATGGTGTCTGGAATGGAGGCTGATCCAAGATCCTTGGTCCGAAATATTGTGTTTCTGTGTTTGTTGCCAAGGATCTCGGACCAGGCTTCATTCCTCACACCGAGCTTCCGCTG
------------TGGTGTCTGGAATGGAGGCTG 	1
----------------------AATGGAGGCTGATCCAAGATC 	3
--------------------------------------------------------------------------TTGCCAAGGATCTCGGACCAGGCTT 	1
-----------------------------------------------------------------------------------ATCTCGGACCAGGCTTCATTC 	2
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCTC 	1
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCCT 	14
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTC 	21
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATTCC 	917
------------------------------------------------------------------------------------TCTCGGACCAGGCTTCATT 	4
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCCTC 	1
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTC 	2
-------------------------------------------------------------------------------------CTCGGACCAGGCTTCATTCC 	13
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTC 	222
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCT 	76
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCCTCA 	1
--------------------------------------------------------------------------------------TCGGACCAGGCTTCATTCC 	546


Overlaps with: MNEST041748
Overlaps with miRBase pre-miRNAs: bdi-MIR166f
HuntMi prediction: true miRNA