miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTCGGTTCGCGATCCACAAG

selected species: Arabidopsis thaliana



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TCTCGGTTCGCGATCCACAAG TGTGGGTGGCAAACAAAGACG up 5 0


Secondary structure

TTGGAAAGCAAGGGACTGTCGTCTCGGTTCGCGATCCACAAGTAATCTTTTGTGGAGATTATGAAAACAATCATCACGAGAGGCTACGTGTGGGTGGCAAACAAAGACGACAATCCCTATTCCAGTT
------------------TCGTCTCGGTTCGCGATCCAC 	1
---------------------TCTCGGTTCGCGATCCACAAG 	10
------------------------------------------------------------------------------------------TGGGTGGCAAACAAAGACGAC 	2


Overlaps with: MNEST040176 MNEST040177
Overlaps with miRBase pre-miRNAs: ath-MIR851
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TCTCGGTTCGCGATCCACAAG TGTGGGTGGCAAACAAAGACG up 5 0


Secondary structure

TTGGAAAGCAAGGGACTGTCGTCTCGGTTCGCGATCCACAAGTAATCTTTTGTGGAGATTATGAAAACAATCATCACGAGAGGCTACGTGTGGGTGGCAAACAAAGACGACAATCCCTATTCCAGTT
------------------TCGTCTCGGTTCGCGATCCACA 	4
------------------TCGTCTCGGTTCGCGATCCAC 	12
-------------------CGTCTCGGTTCGCGATCCACA 	1
---------------------TCTCGGTTCGCGATCCACAAGT 	2
---------------------TCTCGGTTCGCGATCCACAAG 	30
----------------------------------------------------------------------------------------TGTGGGTGGCAAACAAAGACG 	2
------------------------------------------------------------------------------------------TGGGTGGCAAACAAAGACGAC 	23
-------------------------------------------------------------------------------------------GGGTGGCAAACAAAGACGACA 	1


Overlaps with: MNEST040176 MNEST040177
Overlaps with miRBase pre-miRNAs: ath-MIR851
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM304284 TCTCGGTTCGCGATCCACAAG TGTGGGTGGCAAACAAAGACG up 5 0


Secondary structure

TTGGAAAGCAAGGGACTGTCGTCTCGGTTCGCGATCCACAAGTAATCTTTTGTGGAGATTATGAAAACAATCATCACGAGAGGCTACGTGTGGGTGGCAAACAAAGACGACAATCCCTATTCCAGTT
------------------TCGTCTCGGTTCGCGATCCAC 	1
---------------------TCTCGGTTCGCGATCCACAAG 	17


Overlaps with: MNEST040176 MNEST040177
Overlaps with miRBase pre-miRNAs: ath-MIR851
HuntMi prediction: true miRNA