miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTCTCTCAACCAACCATAC

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCTCTCTCAACCAACCATAC ATTTTTGGTTTGAGAGAAAGG down 3 1


Secondary structure

CACACGTTACATCACTATCAGTATTTTTGGTTTGAGAGAAAGGAGGACAGGAGGCTACGAGATTTGTTTGTGTTTGATTCTTGGGCGAACTCCTCTCTCTCAACCAACCATACTGATACTAATTGACGTTCG
--------------------GTATTTTTGGTTTGAGAGAAAG 	1
---------------------TATTTTTGGTTTGAGAGAAAGG 	1
---------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATA 	4
---------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATACTG 	1
---------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATACT 	34
---------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATAC 	52
----------------------------------------------------------------------------------------------CTCTCTCAACCAACCATACTG 	19
----------------------------------------------------------------------------------------------CTCTCTCAACCAACCATACT 	1
-----------------------------------------------------------------------------------------------TCTCTCAACCAACCATACTGA 	1
-------------------------------------------------------------------------------------------------TCTCAACCAACCATACTGATA 	1
-------------------------------------------------------------------------------------------------TCTCAACCAACCATACTGAT 	1


Overlaps with: MNEST039594 MNEST051457
Overlaps with miRBase pre-miRNAs: ppt-MIR1029
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115096 TCTCTCTCAACCAACCATACT TATTTTTGGTTTGAGAGAAAGG down 3 1


Secondary structure

GCACACGTTACATCACTATCAGTATTTTTGGTTTGAGAGAAAGGAGGACAGGAGGCTACGAGATTTGTTTGTGTTTGATTCTTGGGCGAACTCCTCTCTCTCAACCAACCATACTGATACTAATTGACGTTCGA
--------------------AGTATTTTTGGTTTGAGAGAAA 	1
---------------------GTATTTTTGGTTTGAGAGAAAG 	6
---------------------GTATTTTTGGTTTGAGAGAAA 	2
----------------------TATTTTTGGTTTGAGAGAAAG 	3
-----------------------ATTTTTGGTTTGAGAGAAAGG 	1
----------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATACTG 	3
----------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATACT 	22
----------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATAC 	15
----------------------------------------------------------------------------------------------TCTCTCTCAACCAACCATA 	3
-----------------------------------------------------------------------------------------------CTCTCTCAACCAACCATACTG 	14
--------------------------------------------------------------------------------------------------TCTCAACCAACCATACTGAT 	5


Overlaps with: MNEST039594 MNEST051457
Overlaps with miRBase pre-miRNAs: ppt-MIR1029
HuntMi prediction: true miRNA