miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTGCATCTAAGGATATGGTCA

selected species: Mus musculus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539850 TCTGCATCTAAGGATATGGTCA ATCATCTCCTTAAATGCAGAAA up 2 0


Secondary structure

CATGCCCGGCCAAATGCTTTTTCTGCATCTAAGGATATGGTCATTTAATTGTTTTTTTCCATGATCATCTCCTTAAATGCAGAAAAAGCAGCCAGTTTTCTGC
---------------------TCTGCATCTAAGGATATGGTCAT 	1
---------------------TCTGCATCTAAGGATATGGTCA 	8
---------------------TCTGCATCTAAGGATATGGTC 	4
----------------------CTGCATCTAAGGATATGGTCAT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539848 TCTGCATCTAAGGATATGGTCA ATCATCTCCTTAAATGCAGAAA up 2 0


Secondary structure

CATGCCCGGCCAAATGCTTTTTCTGCATCTAAGGATATGGTCATTTAATTGTTTTTTTCCATGATCATCTCCTTAAATGCAGAAAAAGCAGCCAGTTTTCTGC
---------------------TCTGCATCTAAGGATATGGTCA 	5
---------------------TCTGCATCTAAGGATATGGTCAT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539861 TCTGCATCTAAGGATATGGTCA ATCATCTCCTTAAATGCAGAAA up 2 0


Secondary structure

CATGCCCGGCCAAATGCTTTTTCTGCATCTAAGGATATGGTCATTTAATTGTTTTTTTCCATGATCATCTCCTTAAATGCAGAAAAAGCAGCCAGTTTTCTGC
---------------------TCTGCATCTAAGGATATGGTCA 	9
---------------------TCTGCATCTAAGGATATGGTCAT 	1
---------------------TCTGCATCTAAGGATATGGTC 	2
---------------------TCTGCATCTAAGGATATGG 	2


HuntMi prediction: true miRNA