miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCTGCATCTGCACCTGCACCA

selected species: Physcomitrella patens



64 records found  

Showing records 1 - 50

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAGC up 4 0


Secondary structure

TACCTCTACATAACTACTCCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTTGTAATTCTACGGCTCGTGGTAGTCTGTTGTTGTGAAGGTGGGATGTAGCTGAGTGTATTACTCGGTGTTCATTTGATCATTATTACCCGATGGTGCGGGTTCTTATGCAGAGCCGTGGCATTGGAGTAATCCTCTACTTTT
---------------ACTCCAATGCCACGTATCTGC 	19
------------------------------ATCTGCATCTGCACCTGCACCA 	1
-------------------------------TCTGCATCTGCACCTGCACCA 	41
-------------------------------TCTGCATCTGCACCTGCACC 	6
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------GTGCGGGTTCTTATGCAGAGC 	7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGCCGTGGCATTGGAGTAA 	5

Overlaps with: MNEST039600 MNEST051463
Overlaps with miRBase pre-miRNAs: ppt-MIR1030f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAAC up 4 0


Secondary structure

TTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTACCCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
--------------------ATCTGCATCTGCACCTGCACCA 	1
---------------------TCTGCATCTGCACCTGCACCA 	41
---------------------TCTGCATCTGCACCTGCACC 	6
---------------------TCTGCATCTGCACCTGCAC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
------------------------------ATCTGCATCTGCACCTGCACCA 	1
-------------------------------TCTGCATCTGCACCTGCACCA 	41
-------------------------------TCTGCATCTGCACCTGCACC 	6
-------------------------------TCTGCATCTGCACCTGCAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAAA 	26
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

CGTTGACGTCGCTCTGTTGCAATGTCATGCATCTGCATCTGCACCTGCACCACAATGTGATCGCGGCGATCTCTGTTCCGGAGGTTCAGCCCGGTAGTTTTACATGCGGCCCTGCATTCAGCGCTGGCATCTTCCGTGGACAAGTTTCGTAGCTCACATTCCGATGGTGCAGTGCTTATGCAGAAGCGTTGCACTGCAACTGATCCACAACGAA
-----------------------------CATCTGCATCTGCACCTGCACC 	1
------------------------------ATCTGCATCTGCACCTGCACCA 	1
-------------------------------TCTGCATCTGCACCTGCACCA 	41
-------------------------------TCTGCATCTGCACCTGCACCAC 	2
-------------------------------TCTGCATCTGCACCTGCACC 	6
-------------------------------TCTGCATCTGCACCTGCAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCAGTGCTTATGCAGAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	12
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCTTATGCAGAAG 	1

Overlaps with: MNEST039596 MNEST051459
Overlaps with miRBase pre-miRNAs: ppt-MIR1030b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAA up 2 1


Secondary structure

AGGTACGCAATTAAAGCTGCACCGTCACATTTCTGCATCTGCACCTGCACCAAAACGCGACTTTGAGGTTGTGATGGAATTCTGCAGTCACACCCAGCCATTTGCAAGAGTGTTCTGCCGGTGTTGGATTGTGGCAATGGATTGCATTCACAGGCTTGTGTACTGGTGCAGTGCTTATGCAGAAATGTTGCGTTGTAGCTCAAACTGGATTGA
-------------------------------TCTGCATCTGCACCTGCACCA 	41
-------------------------------TCTGCATCTGCACCTGCACC 	6
-------------------------------TCTGCATCTGCACCTGCAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAA 	13

Overlaps with: MNEST039595 MNEST051458
Overlaps with miRBase pre-miRNAs: ppt-MIR1030a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

AACAGGAGTGTACATGCTGCAATGCCATGCATCTGCATCTGCACCTGCACCATGGTGTGACCTCGGCGATGAATGTTGTGAAAGGCCGCCCACCGTAGTCTTACATGTGGATCTACAGACAGCGTTGACGTTCTTCGCGGCGAAGCCCTTCTGCTCACATTCCAATGGTGCAGTGCTTATGCAGAAGTATTGTATTACAGCTGACCCTTACAGTT
-----------------------------CATCTGCATCTGCACCTGCACC 	1
------------------------------ATCTGCATCTGCACCTGCACCA 	1
-------------------------------TCTGCATCTGCACCTGCACCA 	41
-------------------------------TCTGCATCTGCACCTGCACC 	6
-------------------------------TCTGCATCTGCACCTGCAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCAGTGCTTATGCAGAAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	12
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCTTATGCAGAAG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	41
---------------------TCTGCATCTGCACCTGCACC 	6
---------------------TCTGCATCTGCACCTGCAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGACA 	12

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM115097 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	41
---------------------TCTGCATCTGCACCTGCACCAC 	2
---------------------TCTGCATCTGCACCTGCACC 	6
---------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAGATGCAGATGCAGAGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGATGCAGATGCAGAGG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGATGCAGATGCAGAGG 	1

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313212 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAGC up 4 0


Secondary structure

TACCTCTACATAACTACTCCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTTGTAATTCTACGGCTCGTGGTAGTCTGTTGTTGTGAAGGTGGGATGTAGCTGAGTGTATTACTCGGTGTTCATTTGATCATTATTACCCGATGGTGCGGGTTCTTATGCAGAGCCGTGGCATTGGAGTAATCCTCTACTTTT
-------------------------------TCTGCATCTGCACCTGCACCA 	31
-------------------------------TCTGCATCTGCACCTGCACCAAA 	1
-------------------------------TCTGCATCTGCACCTGCACC 	1
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------TCTGCATCTGCACCTGCACCAA 	1
--------------------------------CTGCATCTGCACCTGCACCA 	1
---------------------------------TGCATCTGCACCTGCACCA 	1

Overlaps with: MNEST039600 MNEST051463
Overlaps with miRBase pre-miRNAs: ppt-MIR1030f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313212 TCTGCATCTGCACCTGCACCA GTGAGGTGCATATGCAGAGG up 1 1


Secondary structure

GATACTCCTTGCTCTGCTGCATCGTAATGCATCTGCATCTGCACCTGCACCACGTTGTGATAGGAACAAAACTCTGTCTTGCTGATTCCCTGCACACATGCCTTTGTTACCCAGCATTCTCGAATACGGCGTCGGTGCTATCCTCAGATAAGTAGAGTTGTCCTCACTAGGTTGGTGAGGTGCATATGCAGAGGCGTTACATTGCAGCTGCTTAATATTGTG
-------------------------------TCTGCATCTGCACCTGCACCA 	31
-------------------------------TCTGCATCTGCACCTGCACC 	1
-------------------------------TCTGCATCTGCACCTGCAC 	1
--------------------------------CTGCATCTGCACCTGCACCA 	1
---------------------------------TGCATCTGCACCTGCACCA 	1

Overlaps with: MNEST039597 MNEST051460
Overlaps with miRBase pre-miRNAs: ppt-MIR1030c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313212 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAAC up 4 0


Secondary structure

TTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTACCCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
---------------------TCTGCATCTGCACCTGCACCA 	31
---------------------TCTGCATCTGCACCTGCACCAAA 	1
---------------------TCTGCATCTGCACCTGCACC 	1
---------------------TCTGCATCTGCACCTGCAC 	1
---------------------TCTGCATCTGCACCTGCACCAA 	1
----------------------CTGCATCTGCACCTGCACCA 	1
-----------------------TGCATCTGCACCTGCACCA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM313212 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
-------------------------------TCTGCATCTGCACCTGCACCA 	31
-------------------------------TCTGCATCTGCACCTGCACCAAA 	1
-------------------------------TCTGCATCTGCACCTGCACC 	1
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------TCTGCATCTGCACCTGCACCAA 	1
--------------------------------CTGCATCTGCACCTGCACCA 	1
---------------------------------TGCATCTGCACCTGCACCA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCCTATGCAGAAAT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313212 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	31
---------------------TCTGCATCTGCACCTGCACC 	1
---------------------TCTGCATCTGCACCTGCAC 	1
---------------------TCTGCATCTGCACCTGCACCAA 	1
----------------------CTGCATCTGCACCTGCACCA 	1
-----------------------TGCATCTGCACCTGCACCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGACA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCAGACATGTAGTGTTG 	1

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313212 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	31
---------------------TCTGCATCTGCACCTGCACC 	1
---------------------TCTGCATCTGCACCTGCAC 	1
----------------------CTGCATCTGCACCTGCACCA 	1
-----------------------TGCATCTGCACCTGCACCA 	1

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAGC up 4 0


Secondary structure

TACCTCTACATAACTACTCCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTTGTAATTCTACGGCTCGTGGTAGTCTGTTGTTGTGAAGGTGGGATGTAGCTGAGTGTATTACTCGGTGTTCATTTGATCATTATTACCCGATGGTGCGGGTTCTTATGCAGAGCCGTGGCATTGGAGTAATCCTCTACTTTT
-------------------------------TCTGCATCTGCACCTGCACCA 	12

Overlaps with: MNEST039600 MNEST051463
Overlaps with miRBase pre-miRNAs: ppt-MIR1030f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGAGGTGCATATGCAGAGG up 1 1


Secondary structure

GATACTCCTTGCTCTGCTGCATCGTAATGCATCTGCATCTGCACCTGCACCACGTTGTGATAGGAACAAAACTCTGTCTTGCTGATTCCCTGCACACATGCCTTTGTTACCCAGCATTCTCGAATACGGCGTCGGTGCTATCCTCAGATAAGTAGAGTTGTCCTCACTAGGTTGGTGAGGTGCATATGCAGAGGCGTTACATTGCAGCTGCTTAATATTGTG
-------------------------------TCTGCATCTGCACCTGCACCA 	12
-------------------------------TCTGCATCTGCACCTGCACCAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGGTGCATATGCAGAGG 	1

Overlaps with: MNEST039597 MNEST051460
Overlaps with miRBase pre-miRNAs: ppt-MIR1030c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAAC up 4 0


Secondary structure

TTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTACCCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
---------------------TCTGCATCTGCACCTGCACCA 	12


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
-------------------------------TCTGCATCTGCACCTGCACCA 	12
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAAA 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

CGTTGACGTCGCTCTGTTGCAATGTCATGCATCTGCATCTGCACCTGCACCACAATGTGATCGCGGCGATCTCTGTTCCGGAGGTTCAGCCCGGTAGTTTTACATGCGGCCCTGCATTCAGCGCTGGCATCTTCCGTGGACAAGTTTCGTAGCTCACATTCCGATGGTGCAGTGCTTATGCAGAAGCGTTGCACTGCAACTGATCCACAACGAA
-------------------------------TCTGCATCTGCACCTGCACCA 	12
-------------------------------TCTGCATCTGCACCTGCACCAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	8

Overlaps with: MNEST039596 MNEST051459
Overlaps with miRBase pre-miRNAs: ppt-MIR1030b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

AACAGGAGTGTACATGCTGCAATGCCATGCATCTGCATCTGCACCTGCACCATGGTGTGACCTCGGCGATGAATGTTGTGAAAGGCCGCCCACCGTAGTCTTACATGTGGATCTACAGACAGCGTTGACGTTCTTCGCGGCGAAGCCCTTCTGCTCACATTCCAATGGTGCAGTGCTTATGCAGAAGTATTGTATTACAGCTGACCCTTACAGTT
-------------------------------TCTGCATCTGCACCTGCACCA 	12
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	12
---------------------TCTGCATCTGCACCTGCACCAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGAGATGCAGATGCAGAGG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGATGCAGATGCAGAGG 	1

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Physcomitrella patens GSM115095 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	12
----------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGACA 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCAGACATGTAGTGTTG 	1

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAGC up 4 0


Secondary structure

TACCTCTACATAACTACTCCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTTGTAATTCTACGGCTCGTGGTAGTCTGTTGTTGTGAAGGTGGGATGTAGCTGAGTGTATTACTCGGTGTTCATTTGATCATTATTACCCGATGGTGCGGGTTCTTATGCAGAGCCGTGGCATTGGAGTAATCCTCTACTTTT
-----------------------------TATCTGCATCTGCACCTGCA 	1
-------------------------------TCTGCATCTGCACCTGCACCA 	28
-------------------------------TCTGCATCTGCACCTGCACC 	3
-------------------------------TCTGCATCTGCACCTGCACCAA 	1
--------------------------------CTGCATCTGCACCTGCACCAAA 	1

Overlaps with: MNEST039600 MNEST051463
Overlaps with miRBase pre-miRNAs: ppt-MIR1030f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGAGGTGCATATGCAGAGG up 1 1


Secondary structure

GATACTCCTTGCTCTGCTGCATCGTAATGCATCTGCATCTGCACCTGCACCACGTTGTGATAGGAACAAAACTCTGTCTTGCTGATTCCCTGCACACATGCCTTTGTTACCCAGCATTCTCGAATACGGCGTCGGTGCTATCCTCAGATAAGTAGAGTTGTCCTCACTAGGTTGGTGAGGTGCATATGCAGAGGCGTTACATTGCAGCTGCTTAATATTGTG
-------------------------------TCTGCATCTGCACCTGCACCA 	28
-------------------------------TCTGCATCTGCACCTGCACC 	3
-------------------------------TCTGCATCTGCACCTGCACCAC 	1

Overlaps with: MNEST039597 MNEST051460
Overlaps with miRBase pre-miRNAs: ppt-MIR1030c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAAC up 4 0


Secondary structure

TTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTACCCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
-------------------TATCTGCATCTGCACCTGCA 	1
---------------------TCTGCATCTGCACCTGCACCA 	28
---------------------TCTGCATCTGCACCTGCACC 	3
---------------------TCTGCATCTGCACCTGCACCAA 	1
----------------------CTGCATCTGCACCTGCACCAAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

CGTTGACGTCGCTCTGTTGCAATGTCATGCATCTGCATCTGCACCTGCACCACAATGTGATCGCGGCGATCTCTGTTCCGGAGGTTCAGCCCGGTAGTTTTACATGCGGCCCTGCATTCAGCGCTGGCATCTTCCGTGGACAAGTTTCGTAGCTCACATTCCGATGGTGCAGTGCTTATGCAGAAGCGTTGCACTGCAACTGATCCACAACGAA
-------------------------------TCTGCATCTGCACCTGCACCA 	28
-------------------------------TCTGCATCTGCACCTGCACC 	3
-------------------------------TCTGCATCTGCACCTGCACCAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	16
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAA 	10
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCTTATGCAGAAG 	1

Overlaps with: MNEST039596 MNEST051459
Overlaps with miRBase pre-miRNAs: ppt-MIR1030b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
-----------------------------TATCTGCATCTGCACCTGCA 	1
-------------------------------TCTGCATCTGCACCTGCACCA 	28
-------------------------------TCTGCATCTGCACCTGCACC 	3
-------------------------------TCTGCATCTGCACCTGCACCAA 	1
--------------------------------CTGCATCTGCACCTGCACCAAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

AACAGGAGTGTACATGCTGCAATGCCATGCATCTGCATCTGCACCTGCACCATGGTGTGACCTCGGCGATGAATGTTGTGAAAGGCCGCCCACCGTAGTCTTACATGTGGATCTACAGACAGCGTTGACGTTCTTCGCGGCGAAGCCCTTCTGCTCACATTCCAATGGTGCAGTGCTTATGCAGAAGTATTGTATTACAGCTGACCCTTACAGTT
-------------------------------TCTGCATCTGCACCTGCACCA 	28
-------------------------------TCTGCATCTGCACCTGCACC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	16
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAA 	10
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAGT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCTTATGCAGAAG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	28
---------------------TCTGCATCTGCACCTGCACC 	3
---------------------TCTGCATCTGCACCTGCACCAA 	1

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Physcomitrella patens GSM313213 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	28
---------------------TCTGCATCTGCACCTGCACC 	3
---------------------TCTGCATCTGCACCTGCACCAC 	1

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAGC up 4 0


Secondary structure

TACCTCTACATAACTACTCCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTTGTAATTCTACGGCTCGTGGTAGTCTGTTGTTGTGAAGGTGGGATGTAGCTGAGTGTATTACTCGGTGTTCATTTGATCATTATTACCCGATGGTGCGGGTTCTTATGCAGAGCCGTGGCATTGGAGTAATCCTCTACTTTT
---------------ACTCCAATGCCACGTATCTGC 	3
-------------------------------TCTGCATCTGCACCTGCACCA 	68
-------------------------------TCTGCATCTGCACCTGCAC 	3
-------------------------------TCTGCATCTGCACCTGCACC 	1
--------------------------------CTGCATCTGCACCTGCACCA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------GTGCGGGTTCTTATGCAGAGC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------GTGCGGGTTCTTATGCAGAG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGTTCTTATGCAGAGC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGCCGTGGCATTGGAGTAA 	3

Overlaps with: MNEST039600 MNEST051463
Overlaps with miRBase pre-miRNAs: ppt-MIR1030f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGAGGTGCATATGCAGAGG up 1 1


Secondary structure

GATACTCCTTGCTCTGCTGCATCGTAATGCATCTGCATCTGCACCTGCACCACGTTGTGATAGGAACAAAACTCTGTCTTGCTGATTCCCTGCACACATGCCTTTGTTACCCAGCATTCTCGAATACGGCGTCGGTGCTATCCTCAGATAAGTAGAGTTGTCCTCACTAGGTTGGTGAGGTGCATATGCAGAGGCGTTACATTGCAGCTGCTTAATATTGTG
-------------------------------TCTGCATCTGCACCTGCACCA 	68
-------------------------------TCTGCATCTGCACCTGCACCAC 	4
-------------------------------TCTGCATCTGCACCTGCAC 	3
-------------------------------TCTGCATCTGCACCTGCACC 	1
--------------------------------CTGCATCTGCACCTGCACCA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGGTGCATATGCAGAGG 	2

Overlaps with: MNEST039597 MNEST051460
Overlaps with miRBase pre-miRNAs: ppt-MIR1030c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAAC up 4 0


Secondary structure

TTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTACCCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
---------------------TCTGCATCTGCACCTGCACCA 	68
---------------------TCTGCATCTGCACCTGCAC 	3
---------------------TCTGCATCTGCACCTGCACC 	1
----------------------CTGCATCTGCACCTGCACCA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------GTGCGGGTTCTTATGCAGAAC 	16
---------------------------------------------------------------------------------------------------------------------------------------------------------GTGCGGGTTCTTATGCAGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTATGCAGAACCGTGGCA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATGCAGAACCGTGGCA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
-------------------------------TCTGCATCTGCACCTGCACCA 	68
-------------------------------TCTGCATCTGCACCTGCAC 	3
-------------------------------TCTGCATCTGCACCTGCACC 	1
--------------------------------CTGCATCTGCACCTGCACCA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAAA 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

CGTTGACGTCGCTCTGTTGCAATGTCATGCATCTGCATCTGCACCTGCACCACAATGTGATCGCGGCGATCTCTGTTCCGGAGGTTCAGCCCGGTAGTTTTACATGCGGCCCTGCATTCAGCGCTGGCATCTTCCGTGGACAAGTTTCGTAGCTCACATTCCGATGGTGCAGTGCTTATGCAGAAGCGTTGCACTGCAACTGATCCACAACGAA
-------------------------------TCTGCATCTGCACCTGCACCA 	68
-------------------------------TCTGCATCTGCACCTGCACCAC 	4
-------------------------------TCTGCATCTGCACCTGCAC 	3
-------------------------------TCTGCATCTGCACCTGCACC 	1
--------------------------------CTGCATCTGCACCTGCACCA 	2
---------------------------------TGCATCTGCACCTGCACCACAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGAA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	38
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAA 	4

Overlaps with: MNEST039596 MNEST051459
Overlaps with miRBase pre-miRNAs: ppt-MIR1030b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

AACAGGAGTGTACATGCTGCAATGCCATGCATCTGCATCTGCACCTGCACCATGGTGTGACCTCGGCGATGAATGTTGTGAAAGGCCGCCCACCGTAGTCTTACATGTGGATCTACAGACAGCGTTGACGTTCTTCGCGGCGAAGCCCTTCTGCTCACATTCCAATGGTGCAGTGCTTATGCAGAAGTATTGTATTACAGCTGACCCTTACAGTT
-------------------------------TCTGCATCTGCACCTGCACCA 	68
-------------------------------TCTGCATCTGCACCTGCACCAT 	1
-------------------------------TCTGCATCTGCACCTGCAC 	3
-------------------------------TCTGCATCTGCACCTGCACC 	1
--------------------------------CTGCATCTGCACCTGCACCA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGAA 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	38
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAA 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	68
---------------------TCTGCATCTGCACCTGCAC 	3
---------------------TCTGCATCTGCACCTGCACC 	1
----------------------CTGCATCTGCACCTGCACCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGACA 	3

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
38 Physcomitrella patens GSM313215 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	68
---------------------TCTGCATCTGCACCTGCACCAC 	4
---------------------TCTGCATCTGCACCTGCAC 	3
---------------------TCTGCATCTGCACCTGCACC 	1
----------------------CTGCATCTGCACCTGCACCA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGATGCAGATGCAGAGG 	4

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
39 Physcomitrella patens GSM115096 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAGC up 4 0


Secondary structure

TACCTCTACATAACTACTCCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTTGTAATTCTACGGCTCGTGGTAGTCTGTTGTTGTGAAGGTGGGATGTAGCTGAGTGTATTACTCGGTGTTCATTTGATCATTATTACCCGATGGTGCGGGTTCTTATGCAGAGCCGTGGCATTGGAGTAATCCTCTACTTTT
---------------ACTCCAATGCCACGTATCTGC 	2
-------------------------------TCTGCATCTGCACCTGCACCA 	15

Overlaps with: MNEST039600 MNEST051463
Overlaps with miRBase pre-miRNAs: ppt-MIR1030f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
40 Physcomitrella patens GSM115096 TCTGCATCTGCACCTGCACCA GTGAGGTGCATATGCAGAGG up 1 1


Secondary structure

GATACTCCTTGCTCTGCTGCATCGTAATGCATCTGCATCTGCACCTGCACCACGTTGTGATAGGAACAAAACTCTGTCTTGCTGATTCCCTGCACACATGCCTTTGTTACCCAGCATTCTCGAATACGGCGTCGGTGCTATCCTCAGATAAGTAGAGTTGTCCTCACTAGGTTGGTGAGGTGCATATGCAGAGGCGTTACATTGCAGCTGCTTAATATTGTG
-------------------------------TCTGCATCTGCACCTGCACCA 	15
-------------------------------TCTGCATCTGCACCTGCACCAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGGTGCATATGCAGAGG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGGTGCATATGCAGAGG 	1

Overlaps with: MNEST039597 MNEST051460
Overlaps with miRBase pre-miRNAs: ppt-MIR1030c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
41 Physcomitrella patens GSM115096 TCTGCATCTGCACCTGCACCA GTGCGGGTTCTTATGCAGAAC up 4 0


Secondary structure

TTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTACCCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
---------------------TCTGCATCTGCACCTGCACCA 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
42 Physcomitrella patens GSM115096 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
-------------------------------TCTGCATCTGCACCTGCACCA 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
43 Physcomitrella patens GSM115096 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	15
----------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGACA 	4

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
44 Physcomitrella patens GSM115096 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	15
---------------------TCTGCATCTGCACCTGCACCAC 	1

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
45 Physcomitrella patens GSM313216 TCTGCATCTGCACCTGCACCA GTGAGGTGCATATGCAGAGG up 1 1


Secondary structure

GATACTCCTTGCTCTGCTGCATCGTAATGCATCTGCATCTGCACCTGCACCACGTTGTGATAGGAACAAAACTCTGTCTTGCTGATTCCCTGCACACATGCCTTTGTTACCCAGCATTCTCGAATACGGCGTCGGTGCTATCCTCAGATAAGTAGAGTTGTCCTCACTAGGTTGGTGAGGTGCATATGCAGAGGCGTTACATTGCAGCTGCTTAATATTGTG
-------------------------------TCTGCATCTGCACCTGCACCA 	89
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------TCTGCATCTGCACCTGCACCAC 	9
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGGTGCATATGCAGAG 	1

Overlaps with: MNEST039597 MNEST051460
Overlaps with miRBase pre-miRNAs: ppt-MIR1030c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
46 Physcomitrella patens GSM313216 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGAAA up 2 1


Secondary structure

CTACATAACTCCAAAGCATCAACGTCACGTATCTGCATCTGCACCTGCACCAAAATTGCAATTCTAGGCCTGTAATTAATTTTCTGTCATGCCCAGTCGTCCTGAAAGTGAGGTGTACTGGAATTGACTGCGGCAGAATGTTACATTCACATTCTTGCATACTGGTGCAGTGCCTATGCAGAAATGTGGCGCTGTAGCTGATAACAGAACGA
-------------------------------TCTGCATCTGCACCTGCACCA 	89
-------------------------------TCTGCATCTGCACCTGCACCAAA 	2
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------TCTGCATCTGCACCTGCACCAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGAAA 	9


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
47 Physcomitrella patens GSM313216 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

CGTTGACGTCGCTCTGTTGCAATGTCATGCATCTGCATCTGCACCTGCACCACAATGTGATCGCGGCGATCTCTGTTCCGGAGGTTCAGCCCGGTAGTTTTACATGCGGCCCTGCATTCAGCGCTGGCATCTTCCGTGGACAAGTTTCGTAGCTCACATTCCGATGGTGCAGTGCTTATGCAGAAGCGTTGCACTGCAACTGATCCACAACGAA
-------------------------------TCTGCATCTGCACCTGCACCA 	89
-------------------------------TCTGCATCTGCACCTGCACCACA 	1
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------TCTGCATCTGCACCTGCACCAC 	9
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCAGTGCTTATGCAGAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	66
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAA 	22
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAGC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCTTATGCAGAAG 	1

Overlaps with: MNEST039596 MNEST051459
Overlaps with miRBase pre-miRNAs: ppt-MIR1030b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
48 Physcomitrella patens GSM313216 TCTGCATCTGCACCTGCACCA GTGCAGTGCTTATGCAGAAG up 2 1


Secondary structure

AACAGGAGTGTACATGCTGCAATGCCATGCATCTGCATCTGCACCTGCACCATGGTGTGACCTCGGCGATGAATGTTGTGAAAGGCCGCCCACCGTAGTCTTACATGTGGATCTACAGACAGCGTTGACGTTCTTCGCGGCGAAGCCCTTCTGCTCACATTCCAATGGTGCAGTGCTTATGCAGAAGTATTGTATTACAGCTGACCCTTACAGTT
-------------------------------TCTGCATCTGCACCTGCACCA 	89
-------------------------------TCTGCATCTGCACCTGCAC 	1
-------------------------------TCTGCATCTGCACCTGCACCAT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGCAGTGCTTATGCAGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCAGTGCTTATGCAGAAG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAG 	66
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAA 	22
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCTTATGCAGAAGT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTGCTTATGCAGAAG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
49 Physcomitrella patens GSM313216 TCTGCATCTGCACCTGCACCA GTGCAGTGCCTATGCAGACA up 2 1


Secondary structure

TTGAAGCTGCAACGCTACTTTTCTGCATCTGCACCTGCACCAAGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATGCCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTGGTGCAGTGCCTATGCAGACATGTAGTGTTGTAGCTGGA
---------------------TCTGCATCTGCACCTGCACCA 	89
---------------------TCTGCATCTGCACCTGCAC 	1
---------------------TCTGCATCTGCACCTGCACCAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGTGCCTATGCAGACA 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCAGACATGTAGTGTTG 	1

Overlaps with: MNEST039599 MNEST051462
Overlaps with miRBase pre-miRNAs: ppt-MIR1030e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
50 Physcomitrella patens GSM313216 TCTGCATCTGCACCTGCACCA GTGAGATGCAGATGCAGAGG up 1 1


Secondary structure

GCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCCGTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACATTGCAACTGAC
---------------------TCTGCATCTGCACCTGCACCA 	89
---------------------TCTGCATCTGCACCTGCAC 	1
---------------------TCTGCATCTGCACCTGCACCAC 	9
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGATGCAGATGCAGAGG 	4

Overlaps with: MNEST039598 MNEST051461
Overlaps with miRBase pre-miRNAs: ppt-MIR1030d
HuntMi prediction: true miRNA